View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503R-Insertion-16 (Length: 980)
Name: NF1503R-Insertion-16
Description: NF1503R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503R-Insertion-16 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 804; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 9 - 969
Target Start/End: Complemental strand, 2688142 - 2687178
Alignment:
| Q |
9 |
catttttgctgggtttagtgttgctatcatgacagtacagcaggtgtaggtggtgctgcctgtctgctgcgcagctgattgttggttttttggcttctgg |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2688142 |
catttttgctgggtttagtgttgctgtcatgacagtacagcaggtgtaggtgctgctgcctgtctgctgcgcagctgattgttggttttttggcttctgg |
2688043 |
T |
|
| Q |
109 |
agccgctgttcggttttgggagatgtgctgggactgtttcgggttggtttagggatcgctaggggcttgaattttgatgtgatttattagatttcagacc |
208 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2688042 |
agctgctgtttggttttgggagatgtgctgggactgtttcgggttggtttagggatcgctaggggcttgaattttgatgtgatttattagatttcagacc |
2687943 |
T |
|
| Q |
209 |
catagcatttgccttgccgtttggttttgtattctggtgcttgttttgttgtatcattttcggttgaggcaaacttgtgtttgcggggtggatgttacgc |
308 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2687942 |
catagcatttgccttgctgtttggttttgtattctggtgcttgttttgttgtatcattttcggttgaggcaaacttgtgtttgcatggtggatgttacgc |
2687843 |
T |
|
| Q |
309 |
ctatatacggcatctttgtattgctttcttttccatctctttgcgtcttgcaagagtttcggtcttaataaattttgccgtttcaaaagaaaagataaat |
408 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2687842 |
ctatatacggcatctttgtattgcttttttttccgtctctttgcgtcttgtaagagtttcggtcttaataaattttgccgtttcaaaagaaaagataaat |
2687743 |
T |
|
| Q |
409 |
tcttgtaaatctaatgggttactttcactgcaattgaaaactggtaggctaagttggttnnnnnnntggagaccaagttatactaaaagtgactgattaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2687742 |
tcttgtaaatctaatgggttactttcactgcaattgaaaattggtaggctaagttggttaaaaaaatggagaccaagttatactaaaagtgactgattaa |
2687643 |
T |
|
| Q |
509 |
aattaagaagatgaagagagttgatgacaattgaactagtttgagttaagagataaagagttggaagtcatgatttaaatttaaacnnnnnnnnnnnntt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2687642 |
aattaagaagatgaagagagttgatgacaattaaactagtttgagttaagagataaagagttggaagtcatgatttaaatttaaacaaaaaagaaaaatt |
2687543 |
T |
|
| Q |
609 |
aatctaacaactaactactatatagacaaaatgacaatagtcattgaaaattcacatacacaaataaaaaagttgtagtttaaatttcaatcaacttaac |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2687542 |
aatctaacaactaactactatatagacaaaatgataatagtcattgaaaattcacatacacaaataaaaaagttgtagtttaaatttcaatcaatttaac |
2687443 |
T |
|
| Q |
709 |
atttttgtcaattaagataggacttatgcacatatcaagattttataatcgatggtacacatagggcttgaaagttgaaagattccaaaaattattaata |
808 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2687442 |
atttttgtcaattaagataggacttatacacatatcaagattttataatcgatggtacacatagggcttgaaagttgaaagattccaaaaattattaata |
2687343 |
T |
|
| Q |
809 |
aacaaacacatataaagctatctccgattctccatcttaaaacgaattcagctcagtagcaacactctctaaacacaggatcaatg-tgtttccccactt |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
2687342 |
aacaaacacatataaagctatctccgattctccatcttaaaacgaattcagctcagtagcaacactctctaaacacaggatcaatgttgcttccccactt |
2687243 |
T |
|
| Q |
908 |
cttg-tgtacatct-caaaagcttataagctggtgtcata-ctgcatgaccatatatagtatcat |
969 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
2687242 |
cttgttgtacatctccaaaagcttatcagctggtgtcatacctgcatgaccatatatagtttcat |
2687178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 861 - 946
Target Start/End: Complemental strand, 2694308 - 2694220
Alignment:
| Q |
861 |
tcagtagcaacactctctaaacacaggatcaatg-tgtttccccacttctt-gtgtacatct-caaaagcttataagctggtgtcatac |
946 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| || |||||||||| || ||||||||| ||||||||| | ||| |||||||||| |
|
|
| T |
2694308 |
tcagtagcaacactctctaaacacagaatctatgttgcttccccacttgttattgtacatctccaaaagcttttcagccggtgtcatac |
2694220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 299 - 396
Target Start/End: Complemental strand, 19109554 - 19109461
Alignment:
| Q |
299 |
gatgttacgcctatatacggcatctttgtattgctttcttttccatctctttgcgtcttgcaagagtttcggtcttaataaattttgccgtttcaaaa |
396 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| | || ||| ||||||||||||||| ||||||||||| | ||||| ||||||||||||||| |
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|
| T |
19109554 |
gatgttacgcctatatgtggcatccttgtatt----ttttctccgcctctttgcgtcttgcgagagtttcggtttcaataatatttgccgtttcaaaa |
19109461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 52422091 - 52421989
Alignment:
| Q |
123 |
tttgggagatgtgctgggactgtttcgggttggtttagggatcgctaggggcttgaattttgatgtgatttattagatttcagacccatagcatttgcct |
222 |
Q |
| |
|
|||||||| |||| |||| ||||| |||||||||||||| || ||||||||||||||||||| | | |||||||||||||||||||||||| |||||| |
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|
| T |
52422091 |
tttgggagctgtgatggggctgttgcgggttggtttaggcatagctaggggcttgaattttggttagttttattagatttcagacccatagctgttgcct |
52421992 |
T |
|
| Q |
223 |
tgc |
225 |
Q |
| |
|
||| |
|
|
| T |
52421991 |
tgc |
52421989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 42851821 - 42851708
Alignment:
| Q |
123 |
tttgggagatgtgctgggactgtttcgggttggtttagggatcgctaggggcttgaattttgatgtgatttattagatttcagacccatagcatttgcct |
222 |
Q |
| |
|
|||||||| |||| |||| ||||| |||||||||||||| || |||||| |||||||||||| | | ||||||||||||||||||||||| |||||| |
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|
| T |
42851821 |
tttgggagctgtgatggggctgttgcgggttggtttaggcatagctaggagcttgaattttggttagttttattagatttcagacccatagttgttgcct |
42851722 |
T |
|
| Q |
223 |
tgccgtttggtttt |
236 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
42851721 |
tgctgattggtttt |
42851708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 683
Target Start/End: Complemental strand, 37146321 - 37146268
Alignment:
| Q |
630 |
atagacaaaatgacaatagtcattgaaaattcacatacacaaataaaaaagttg |
683 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| || | ||||||||| |
|
|
| T |
37146321 |
atagacaaaatgacaatagtaattgaaaattcacttacataagtgaaaaagttg |
37146268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 294 - 401
Target Start/End: Original strand, 20794979 - 20795085
Alignment:
| Q |
294 |
gggtggatgttacgcctatatacggcatctttgtattgctttctttt-ccatctctttgcgtcttgcaagagtttcggtcttaataaattttgccgtttc |
392 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||||| || ||||| ||| |||||||| |||||| |||| ||||| |||| |||||||||||| || |
|
|
| T |
20794979 |
gggtggatgttatgcctataggcggcatttttgtattg-ttccttttgccacctctttgcatcttgcgagagcttcgg-cttagtaaattttgccgatta |
20795076 |
T |
|
| Q |
393 |
aaaagaaaa |
401 |
Q |
| |
|
|||| |||| |
|
|
| T |
20795077 |
aaaaaaaaa |
20795085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 18055071 - 18055104
Alignment:
| Q |
295 |
ggtggatgttacgcctatatacggcatctttgta |
328 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
18055071 |
ggtggatgttacgcctatatgcggcatctttgta |
18055104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 27220870 - 27220903
Alignment:
| Q |
294 |
gggtggatgttacgcctatatacggcatctttgt |
327 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
27220870 |
gggtggatgttacgcctatatgcggcatctttgt |
27220903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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