View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503R-Insertion-17 (Length: 1080)
Name: NF1503R-Insertion-17
Description: NF1503R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503R-Insertion-17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 9 - 519
Target Start/End: Original strand, 56240997 - 56241515
Alignment:
| Q |
9 |
ttctttacaattactatcaagaataagaatgggtttatttgttagacgggactttctcctgaagagcttcttcttcnnnnnnnnnnnnnnnnnnnccctg |
108 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
56240997 |
ttctttacaattactatcaagaat------ggatttatttgttagacgggactttctcctgaagagcttcttcttctgatgatgatgat------ccctg |
56241084 |
T |
|
| Q |
109 |
caaacaaatccaatata--------ctttatttttaagaacaactccaagcatcgtaatcaattaatcagagaataattgaagtgactaactctgcatta |
200 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
56241085 |
caaacaaatccaatatatattcaatctatatttttaagaacaactccaaccatcgtaatcaattaatcagagaataattgaa-taactaactctgcatta |
56241183 |
T |
|
| Q |
201 |
ggttgattttgaaagacttgtttcaaagacatgtccattaactcgtcctcagtaaaaactttaagatcatcgacgacggtaatatcataatcatgatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56241184 |
ggttgattttgaaagacttgtttcaaagacatgtccattaactcgtcctcagtaaaaactttaagatcatcgacgacggtaatatcataatcatgatgtt |
56241283 |
T |
|
| Q |
301 |
gaggtggtaattcagattgtagagagtgaagttgagaaagaagtgaatcctgaaaaagaggaaccctaacaattgggccagacatattggagacataaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
56241284 |
gaggtggtaattcagattgtagagagtgaagttgagaaagaagtgaatcctgaaaaagaggaaccctaacaattgggccagacatattggagacgtaaat |
56241383 |
T |
|
| Q |
401 |
gggtccacccctcggaattgaaattgaaggattatca-------------attccaattcatcatcttccatttcttgactctgacggcgcagcaaagga |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
56241384 |
gggtccacccctcggaattgaaattgaaggattatcaattccaattgaacattccaattcatcatcttccatttcttgactctgacggcgcagcaaatga |
56241483 |
T |
|
| Q |
488 |
ctcactctctctagtttctccttctgcacaaa |
519 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |
|
|
| T |
56241484 |
ctcactctctctagtttcttcttctgcacaaa |
56241515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 209 - 440
Target Start/End: Original strand, 23947605 - 23947830
Alignment:
| Q |
209 |
ttgaaagacttgtttcaaagacatgtccattaactcgtcctcagtaaaaactttaagatcatcgacgacggtaatatcataatcatgatgttgaggtggt |
308 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||||||||| || || ||||||| |
|
|
| T |
23947605 |
ttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgc---taatatcatgattcgaatc---aggtggt |
23947698 |
T |
|
| Q |
309 |
aattcagattgtagagagtgaagttgagaaagaagtgaatcctgaaaaagaggaaccctaacaattgggccagacatattggagacataaatgggtccac |
408 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23947699 |
aattcggattggagagagtgaagttgagtaagaattgaatcctgaaaaagaggaaccctaacaattgggccagacatattggagacgaaaatgggtccac |
23947798 |
T |
|
| Q |
409 |
ccctcggaattgaaattgaaggattatcaatt |
440 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||| |
|
|
| T |
23947799 |
cccttggaattgagattgaaggatcatcaatt |
23947830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 565 - 643
Target Start/End: Original strand, 56241621 - 56241699
Alignment:
| Q |
565 |
ggcaatttggtggttttcaaaaaccaaaccggttcaatcattaagcaaatagaagtggaattgcagtttaataatttga |
643 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56241621 |
ggcaatttggtggttttcaaaaaccaaaccggttcaatcattaagcaaatagaagtggaattgcagtttaataatttga |
56241699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 707 - 774
Target Start/End: Original strand, 56241775 - 56241843
Alignment:
| Q |
707 |
aagaatcaataatgaagagctgg-tgacgtttaaggtgagaaagtgacttagtgtgttattgatatagc |
774 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56241775 |
aagaatcaataatgaagagctgggtgacgtttaaggtgagaaagtgacttagtgtgttattgatatagc |
56241843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 56241545 - 56241592
Alignment:
| Q |
517 |
aaaggaaaatattttatccatgtgtcatgttttatttcgataacggtt |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56241545 |
aaaggaaaatattttatccatgtgtcatgttttatttcgataacggtt |
56241592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 23947405 - 23947454
Alignment:
| Q |
33 |
aagaatgggtttatttgttagacgggactttctcctgaagagcttcttct |
82 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
23947405 |
aagaatgggtttatttgttagacgagactttctccttaattgcttcttct |
23947454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 698
Target Start/End: Original strand, 56241710 - 56241745
Alignment:
| Q |
663 |
gaatctatctcacaaatcttgagtatgctatccatg |
698 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
56241710 |
gaatctatctcacaaatcttgagtatgctctccatg |
56241745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 209 - 440
Target Start/End: Complemental strand, 16105335 - 16105110
Alignment:
| Q |
209 |
ttgaaagacttgtttcaaagacatgtccattaactcgtcctcagtaaaaactttaagatcatcgacgacggtaatatcataatcatgatgttgaggtggt |
308 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| | ||||||| || || ||||||| |
|
|
| T |
16105335 |
ttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgctg---atatcatgattcgaatc---aggtggt |
16105242 |
T |
|
| Q |
309 |
aattcagattgtagagagtgaagttgagaaagaagtgaatcctgaaaaagaggaaccctaacaattgggccagacatattggagacataaatgggtccac |
408 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16105241 |
aattcggattggagagagtgaagttgagtaagaattgaatcttgaaaaagaggaaccctaacaattgggccagacatattggagacgtaaatgggtccac |
16105142 |
T |
|
| Q |
409 |
ccctcggaattgaaattgaaggattatcaatt |
440 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||| |
|
|
| T |
16105141 |
cccttggaattgagattgaaggatcatcaatt |
16105110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 16105535 - 16105486
Alignment:
| Q |
33 |
aagaatgggtttatttgttagacgggactttctcctgaagagcttcttct |
82 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
16105535 |
aagaatgggtttatttgttagacgagactttctcctgaattgcttcttct |
16105486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University