View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503R-Insertion-5 (Length: 153)
Name: NF1503R-Insertion-5
Description: NF1503R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503R-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 4951163 - 4951023
Alignment:
| Q |
13 |
agagtaactactacagggccaataggacaaatgatggtggaggttctggtgatagtgatagtggatacctcaagtagcaaaacatataatgaatcaaaag |
112 |
Q |
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| T |
4951163 |
agagtaactactacagggccaatatgacaaatgatggtggaggttctggtgatagtgatagtggatacctcaagtagcaaaacatataatgaatcaaaag |
4951064 |
T |
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| Q |
113 |
ggtatccactataaacattgtggacgaggttttttatggtc |
153 |
Q |
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| T |
4951063 |
ggtatccactaaaaacattgtggacgaggttttttatggtc |
4951023 |
T |
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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 10484747 - 10484846
Alignment:
| Q |
22 |
actacagggccaataggacaaatgatggtggaggttctggtgatagtgatagtggatacctcaagtagcaaaacatataatgaatcaaaagggtatccac |
121 |
Q |
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| T |
10484747 |
actacagggtcaataggacaaatgatggtggaggttctg------gtgatagtggatacctcaagtagcaaaacatat----aatcaaaagagtatccac |
10484836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 55; Significance: 6e-23; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 223756 - 223835
Alignment:
| Q |
67 |
gtgatagtggatacctcaagtagcaaaacatataatgaatcaaaagggtatccactataaacattgtggacgaggttttttatg |
150 |
Q |
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| T |
223756 |
gtgatagtggatacctcaagtagcaaaacata----caatcaaaagtgtatccactaaaaacattgtggacgaggttttttatg |
223835 |
T |
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