View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503R-Insertion-7 (Length: 162)
Name: NF1503R-Insertion-7
Description: NF1503R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503R-Insertion-7 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 3e-80; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 45549019 - 45548865
Alignment:
| Q |
8 |
agaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatccagccacctgtcgctgacagt |
107 |
Q |
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| T |
45549019 |
agaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatccagccacctgttgctgacagt |
45548920 |
T |
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| Q |
108 |
actgaataccctccttcttctggaagccgtgatattgatcagtttgtgccacacc |
162 |
Q |
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| T |
45548919 |
actgaataccctccttcttctggaagccgtgatattgatcagtttgtgccacacc |
45548865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 45550303 - 45550233
Alignment:
| Q |
19 |
cacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatccag |
89 |
Q |
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| T |
45550303 |
cactcgaggaatctctcgagagaatgaatgtgcatgatgagtcaaaacctaccacagaaccaaaaatccag |
45550233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 45549926 - 45549805
Alignment:
| Q |
19 |
cacttgaggaatctctagagagaatgaatgtgcatg---atgagccaaaacctaccacagaaccaaaaatccagccacctgtcgctgacagtactgaata |
115 |
Q |
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| T |
45549926 |
cacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctaccacagaacgaaatatccagccatctgttactgac---actgaata |
45549830 |
T |
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| Q |
116 |
ccctccttcttctggaagccgtgat |
140 |
Q |
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| T |
45549829 |
ccctcctgctgttggaagccatgat |
45549805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 45545137 - 45545062
Alignment:
| Q |
14 |
aacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatccag |
89 |
Q |
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| T |
45545137 |
aacaccactcgaggaatctcttgagagaatgaatgtgcatgacgagtcaaaacctaccacagaaccaaaaatccag |
45545062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 45544230 - 45544156
Alignment:
| Q |
21 |
cttgaggaatctctagagagaatgaatgtgcatg---atgagccaaaacctaccacagaaccaaaaatccagcca |
92 |
Q |
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| T |
45544230 |
cttgaggaatctcttgagagaatgaatgtgcatgatgatgaaccaaatcctaccactgaaacaaaaatccagcca |
45544156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 19671100 - 19671152
Alignment:
| Q |
36 |
gagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatcca |
88 |
Q |
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| T |
19671100 |
gagataatgaatgtgcatgatgagcctaaaccaacaacagaaccaaaaatcca |
19671152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 36610142 - 36610184
Alignment:
| Q |
42 |
atgaatgtgcatgatgagccaaaacctaccacagaaccaaaaa |
84 |
Q |
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| T |
36610142 |
atgaatgtgcatgatgagcctaaacctacaacataaccaaaaa |
36610184 |
T |
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