View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503_high_5 (Length: 499)
Name: NF1503_high_5
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503_high_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 143 - 499
Target Start/End: Original strand, 22441235 - 22441606
Alignment:
| Q |
143 |
cataaatgaactacatctaattcaatcgaataaaaagtaaataaattacctcgcctatgctccacgcaagaaaagtgataaaaacgggaggtaattcctg |
242 |
Q |
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| T |
22441235 |
cataaatgaactacatctaattcaatcgaataaaaagtaaataaattacctcgcctatgctccacgcaagaaaagtgataaaaacgggaggtaactcctg |
22441334 |
T |
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| Q |
243 |
gacctagagaaatcacacaaccaaaaacacgagttagaggtgtgatcaaattacaccagaagagttacattaacagttaaactcattcaacaacataatc |
342 |
Q |
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| T |
22441335 |
gacctggagaaagcacacagccaaagacctgagttagagatgggatcgaattacatcggaggagttacactaacaattacactcattcagtaa---tatc |
22441431 |
T |
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| Q |
343 |
ctatcgtataaatacttctgattcgaaattacaatc-atatag--------atcatatatataaattttgacattaatctataatcatttcctatg---- |
429 |
Q |
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| T |
22441432 |
ctaccagataagtattttggattcaaaattactatcgttatcgtatgaataatcatatctataaattttgacattaatctataattatttcctatgtcat |
22441531 |
T |
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| Q |
430 |
-----tgcatcaagattaacgtcaatcagttcaataatctaaactaatggtaatatccatagaatgaaatagaac |
499 |
Q |
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| T |
22441532 |
cgagatgtgtcaagattaacgtcaatcaattcaataatctaaactaatggcaatatccatagaataaaatagaac |
22441606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 22441143 - 22441237
Alignment:
| Q |
13 |
aatatagtgtctgatgtagtttttcaattatccagtggttagagatatagagtacaaagccgtgttttcaattatgcaatgctatgctcaaccat |
107 |
Q |
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| T |
22441143 |
aatatagtgtctgatgtagtttttcaattatccagtggttagagatatagagtacaaagccgtgttttcaattatgcaatgctatgctcaaccat |
22441237 |
T |
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