View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503_high_8 (Length: 441)

Name: NF1503_high_8
Description: NF1503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503_high_8
NF1503_high_8
[»] chr1 (2 HSPs)
chr1 (4-441)||(29089805-29090242)
chr1 (4-440)||(29104066-29104502)


Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 4 - 441
Target Start/End: Original strand, 29089805 - 29090242
Alignment:
Q  4 atgtcgaagaatatttcagaaagcacgttgctgtaatctgtaagcttggtaagatattgcattgtttgcattgtaagggaatgaataccgccgaaattgg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  29089805 atgtcgaagaatatttcagaaagcacgttgctgtaatctgtaagcttggtaagatattgcattgtttgcgttgtaagggaatgaataccgccgaaattcg 29089904  T
Q  104 ccagcgatttggaagagtccttcaggattgcggactcgaattctgagaaaatatttcttacagattcaacgagtctttgttgtgaattatatgcttgaga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29089905 ccagcgatttggaagagtccttcaggattgcggactcgaattctgagaaaatatttcttacagattcaacgagtctttgttgtgaattatatgcttgaga 29090004  T
Q  204 tttaacaccagaggttgaatcgaacgagaaaatcgattcaacctccggtaacaacacggtgattgtggcatacatatcaagcaaacggaacatcttctcc 303  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  29090005 tttaacaccagaggttgaattgaaagagaaaatcgattcaacctccggtaacaacatggtgattgtggcatacatatcaagcaaacggaaaatcttctcc 29090104  T
Q  304 ggtgtcaatttctttgttttcgcaccgaattcaggaaatcgtaagagacgagtagctccatctcttgaaatttaacccaaacaagcttctctgttggaat 403  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  29090105 ggtgtccatttctttgttttcgcaacgaattcaggaaatcgtaagagaagagtagctccatctcttgaaatttcaccaaaacaagcttctctgatggaat 29090204  T
Q  404 tcgaagcgaaaattctttctcagaggtttctctctcca 441  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  29090205 tcgaagcgaaaattcgttcgcagaggtttctctctcca 29090242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 4 - 440
Target Start/End: Original strand, 29104066 - 29104502
Alignment:
Q  4 atgtcgaagaatatttcagaaagcacgttgctgtaatctgtaagcttggtaagatattgcattgtttgcattgtaagggaatgaataccgccgaaattgg 103  Q
    ||||| |||||||| ||||| ||||||||||||||||||| |||  |  | ||||| |||||||||| |  ||| ||||||||||  ||||||||||| |    
T  29104066 atgtcaaagaatatctcagagagcacgttgctgtaatctgcaagagtaatgagatactgcattgtttcctctgtcagggaatgaactccgccgaaatttg 29104165  T
Q  104 ccagcgatttggaagagtccttcaggattgcggactcgaattctgagaaaatatttcttacagattcaacgagtctttgttgtgaattatatgcttgaga 203  Q
    ||   ||||||||||| |||||||  ||||  ||||| |||||  | | || ||||| |||| | || |  | ||  ||||| |||||||||||||||||    
T  29104166 ccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgaga 29104265  T
Q  204 tttaacaccagaggttgaatcgaacgagaaaatcgattcaacctccggtaacaacacggtgattgtggcatacatatcaagcaaacggaacatcttctcc 303  Q
    ||||||  | |  |||||||  ||||||||||| ||||||| |||||| ||||||||||||||||| || |||||||||||||| || || |||||||||    
T  29104266 tttaacgactgctgttgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaagcgaaaaatcttctcc 29104365  T
Q  304 ggtgtcaatttctttgttttcgcaccgaattcaggaaatcgtaagagacgagtagctccatctcttgaaatttaacccaaacaagcttctctgttggaat 403  Q
    ||  |  ||||||||||||| ||| ||| ||||||||||| ||| ||   | ||||||||||  | ||||| | | | |||||||||||| || ||||||    
T  29104366 ggctttgatttctttgtttttgcaacgacttcaggaaatcttaaaagtaaaatagctccatccttagaaatctcagcaaaacaagcttctttgatggaat 29104465  T
Q  404 tcgaagcgaaaattctttctcagaggtttctctctcc 440  Q
    |||||||||| ||||  || |||||||| ||||||||    
T  29104466 tcgaagcgaagattcgatcgcagaggttcctctctcc 29104502  T

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