View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504-Insertion-10 (Length: 421)
Name: NF1504-Insertion-10
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 37862146 - 37861731
Alignment:
| Q |
7 |
aaatagagaacctgctattatatgaaacgaagctaggtaccaagagttttagagaagatgcagaagacacgttatgacagttaagaacttnnnnnnnnnn |
106 |
Q |
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| T |
37862146 |
aaatagagaacctgctattatatgaaacgaagctaggtaccaagagttttagagaagatgcagaagacactttatgacagttaagaacttaaaaaagaaa |
37862047 |
T |
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| Q |
107 |
nnnnnnnttcaacattatctcatggtcatagagaaaaggggtgagctaaaagaaaaaagagtgaagcaacataagagaactttagttgaattttgaacta |
206 |
Q |
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| T |
37862046 |
atgaaaattcaacattatctcatggtcatagagaaaaagggtgagctagaagaaaaaagagtgaagcaacataagagaactttagttgaattttgaacta |
37861947 |
T |
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| Q |
207 |
aatatggaacagttgaaacatttgaagagttaacatgttcatttagaaactatggtcactacaaaagtccaagaatactc-aatgtggaaattctgtatc |
305 |
Q |
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| T |
37861946 |
aatatggaacagttgaaacatttgaagagttaacatgtttatttagaaactatggtcactaaaaaagtccaagaatactcaaatgtggaaattctgtatc |
37861847 |
T |
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| Q |
306 |
gatgaatgcacaaatgtggcgatttttaccattaatcgctacagcattgtagaaaaacattaatgcttgtgagagatttacaaaataatggatgtcctaa |
405 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37861846 |
gatgaatgcacaaatgtggtgatttttaccattaatcgctacagcattgtagaaaaacattaatgcttgtgagagatttacaaaataatggatgtcctag |
37861747 |
T |
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| Q |
406 |
agcacaaggaaatatt |
421 |
Q |
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| T |
37861746 |
agcacaaggaaatatt |
37861731 |
T |
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