View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504-Insertion-12 (Length: 458)
Name: NF1504-Insertion-12
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-12 |
 | |
|
| [»] chr4 (20 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 20)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 7 - 458
Target Start/End: Original strand, 4023110 - 4023561
Alignment:
| Q |
7 |
acaatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaatcaaagttatctttgt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023110 |
acaatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacttccaggataaacatacactgcttgataagaatcaaagttatctttgt |
4023209 |
T |
|
| Q |
107 |
aatcaacataactttcaacgtgatcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacccaatatttatgag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023210 |
aatcaacataactttcaacgtgatcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacccaatatttatgag |
4023309 |
T |
|
| Q |
207 |
agaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaatacagtcttcagt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023310 |
agaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaatacagtcttcagt |
4023409 |
T |
|
| Q |
307 |
gatctacattcaacaagtagagtttcaactgatgaaggaagctcgggtagaaccaggagctttgagcaaaatcgtatgtctaattttcttagtcttgtaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023410 |
gatctacattcaacaagtagagtttcaactgatgaaggaagctcgggtagaaccaggagctttgagcaaaatcgtatgtctaattttcttagtcttgtaa |
4023509 |
T |
|
| Q |
407 |
gattcttgatgcttgaaggtatgctctcaatttcactgtatcttaaaaccag |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4023510 |
gattcttgatgcttgaaggtatgctctcaatttcactgtatcttaaaaccag |
4023561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 441
Target Start/End: Complemental strand, 3922127 - 3921687
Alignment:
| Q |
7 |
acaatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaatcaaagttatctttgt |
106 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3922127 |
acaatcatgccatccattgttgtcttgtactccaaccactttggaacactacttccaggatacacatacactgcttgataagaatcaaagttatctttgt |
3922028 |
T |
|
| Q |
107 |
aatcaacataactttcaacgtg---atcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacccaatatttat |
203 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
3922027 |
aatcaacataactttcagcatattcatcatgttccagtgttgataaatgttgatgtgtaaacttcatcaaattgatttgcagattcaacccaatatttat |
3921928 |
T |
|
| Q |
204 |
gagagaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaatacagtcttc |
303 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3921927 |
cagagaaagttcatccaagttgaagcaattccagaactcaacccttttcttgttttccttgaattgttcagcaactgttgaagggaacaatacagtcttt |
3921828 |
T |
|
| Q |
304 |
agtgatctaca---ttcaacaagtagagtttcaactgatgaaggaagctcgggtagaaccaggagctttgagcaaaatcgtatgtctaattttcttagtc |
400 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||| |
|
|
| T |
3921827 |
agtgattcacagttgtcaacaagtagactttcaactgatgaaggaagctcgggtagaaccagaagcttgttggaaaatcgtatgtataattttcttagtc |
3921728 |
T |
|
| Q |
401 |
ttgtaagattcttgatgcttgaaggtatgctctcaatttca |
441 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3921727 |
ttgtaagattcttgatgcttgaatgtatgctctcaatttca |
3921687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 439
Target Start/End: Original strand, 3985034 - 3985466
Alignment:
| Q |
7 |
acaatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaatcaaagttatctttgt |
106 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
3985034 |
acaatcatatcattctttgttgtcttgtactccaaccactctggaacactacttccaggatatacatacactgcttgataagaatcaaggatatctttgt |
3985133 |
T |
|
| Q |
107 |
aatcaacataactttcaacgtgatcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacccaatatttatgag |
206 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
3985134 |
aatcaacatagctttcaactttatcatgttccagtgtcgataaatgttgatatgcaaactccatcaaattgatttgaagattcaacccaatatttatgag |
3985233 |
T |
|
| Q |
207 |
agaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaatacagtcttcagt |
306 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
3985234 |
agaacgttcatccaatttgaagcaattccagaactcaatccttttcttgttttcctttaattgttcagcaactgttgaagggaaaaatacagacttcagt |
3985333 |
T |
|
| Q |
307 |
gatctacattcaacaagtagagtttcaactgatgaaggaagctcgggtagaaccaggagctttgagcaaaatcgtatgtctaattttcttagtcttgtaa |
406 |
Q |
| |
|
|| ||| ||||||||||||||||||| |||||| |||||||| |||||| |||| |||| |||||| | |||||||||||||||||||||||||| |
|
|
| T |
3985334 |
gacacacagtcaacaagtagagtttcaagtgatgatggaagctcaggtagagccagaagctccgagcaatcgcttatgtctaattttcttagtcttgtaa |
3985433 |
T |
|
| Q |
407 |
gattcttgatgcttgaaggtatgctctcaattt |
439 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
3985434 |
gatccttgatgcttgaaggtatgctctcaattt |
3985466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 27 - 458
Target Start/End: Original strand, 4000211 - 4000645
Alignment:
| Q |
27 |
tgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaatcaaagttatctttgtaatcaacataactttcaac- |
125 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||| | ||||| || ||||||| ||||||| ||||| |
|
|
| T |
4000211 |
tgtcttgtactccaaccactctggaacactacttccaggatatacatacaatgcttgataagaagaatggttatattcgtaatcagcataactgtcaaca |
4000310 |
T |
|
| Q |
126 |
--gtgatcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacccaatatttatgagagaatgttcatccaagt |
223 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||| |||||| || | ||| |||| || ||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
4000311 |
taatcatcatgttccagtgtcaataaatgttgatatgcaaacttgattagattgattttcatattgaacccaatatttacgagagaatgttcatccaagt |
4000410 |
T |
|
| Q |
224 |
tccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaatacagtcttcagtgatctacattcaacaag |
323 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4000411 |
tgaagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaattgttgaagggaacaatacagtcttcagtgatatacattcaacaag |
4000510 |
T |
|
| Q |
324 |
tagagtttcaactgatgaaggaagctcgggtagaaccaggagctttgagcaaaatcgtatgtctaattttcttagtcttgtaagattcttgatgcttgaa |
423 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
4000511 |
tagagtttcaactgataaaggaagcacaggtagagccagaagctttaagcaatatcgtatgtctaattttcttagtcttgtaagattctggatgctagaa |
4000610 |
T |
|
| Q |
424 |
ggtatgctctcaatttcactgtatcttaaaaccag |
458 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||| |
|
|
| T |
4000611 |
ggtatgatctcaatttcactctttcttaaaaccag |
4000645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 22 - 437
Target Start/End: Complemental strand, 3935460 - 3935042
Alignment:
| Q |
22 |
tttgttgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaatcaaagttatctttgtaatcaacataacttt |
121 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3935460 |
tttgttgtcttgtactcaaaccaatctggaacactacttccagaatacacatacaatgcttgataagaatcaaagttatctttgtaatcaacataagttt |
3935361 |
T |
|
| Q |
122 |
caac---gtgatcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacccaatatttatgagagaatgttcatc |
218 |
Q |
| |
|
|||| | ||||||||||| ||| ||||||| |||||||| |||||| |||||||| |||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
3935360 |
caacataatcatcatgttccactgttgataaatcttgatatgcaaacttcatcaaattgatttgcagattcaacccaatatttatcagagaacgctcatc |
3935261 |
T |
|
| Q |
219 |
caagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaatacagtcttcagtgatctacattca |
318 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| | | |
|
|
| T |
3935260 |
caagttcaagcaattccagaacttaacttctttcttgttttccttgaattgttcagcaactgttgaagggaacaatacagacttcagtgagtcacagtga |
3935161 |
T |
|
| Q |
319 |
acaagtagagtttcaactgatgaaggaagctcgggtagaaccaggagctttgagcaaaatcgtatgtctaattttcttagtcttgtaagattcttgatgc |
418 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||| |||| ||||| | ||||||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
3935160 |
acaagtagaatttcaactgatgaagaaagctcgggtagagccagaagcttgttggaaaatcgtatgtctagttttcttagcctcgtaagattcttgatgc |
3935061 |
T |
|
| Q |
419 |
ttgaaggtatgctctcaat |
437 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
3935060 |
ttgaaggtatgatctcaat |
3935042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 438
Target Start/End: Complemental strand, 3957584 - 3957151
Alignment:
| Q |
9 |
aatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaatcaaagttatctttgtaa |
108 |
Q |
| |
|
|||||| ||||||| || |||| |||||| ||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3957584 |
aatcatatcatcctgtgctgtcctgtacttgaaccactctggaacactacttccaggatacaaatacactgcttgataagaatcaaatttatctttgtaa |
3957485 |
T |
|
| Q |
109 |
tcaacataactttcaacgtg------atcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacccaatattta |
202 |
Q |
| |
|
||| ||| |||||| | || |||| ||||| || | ||||| |||||| |||||| |||||||| || |||| ||||||||||||||||| |
|
|
| T |
3957484 |
tcagcattgctttcattgcttttagcatgatgtaacagtgccgctgaatgtcgatatgcaaacttcatcaaattgatctgcacattcaacccaatattta |
3957385 |
T |
|
| Q |
203 |
tgagagaatgttcatccaagttccagcaattccagaactcaatccttttctt-gttttccttgaattgttcagaaactgttgaagggaacaatacagtct |
301 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| || ||| | ||||||| |||||||||| |
|
|
| T |
3957384 |
tgagagagcattcatccaagttcaagcaattccagaactcaatccttttctttgttttccttgaattgttgagcaacag---aagggaaaaatacagtct |
3957288 |
T |
|
| Q |
302 |
tcagtgatctacattcaacaagtagagtttcaactgatgaaggaagctcgggtagaaccaggagctttgagcaaaatcgtatgtctaattttcttagtct |
401 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3957287 |
tcaatgattcacattcaacaagtagagtttcaactgatgaaggaagctcgggtagagccacaagctttgagcaaaatcgtatgtctaattttcttagtct |
3957188 |
T |
|
| Q |
402 |
tgtaagattcttgatgcttgaaggtatgctctcaatt |
438 |
Q |
| |
|
||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
3957187 |
tgtgagattcttgatgctcgacggtatgctctcaatt |
3957151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 172 - 458
Target Start/End: Original strand, 3815813 - 3816102
Alignment:
| Q |
172 |
aaattcatttgcagattcaacccaatatttatgagagaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgtt |
271 |
Q |
| |
|
||||| ||||| | ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3815813 |
aaattgatttgaacattcaacccaacatttatgagagaactttcatccaagttctcgcaattccagaactcaacacttttcttgttttccttgaattgtt |
3815912 |
T |
|
| Q |
272 |
cagaaactgttgaagggaacaatacagtcttcagtgatctacattc---aacaagtagagtttcaactgatgaaggaagctcgggtagaaccaggagctt |
368 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||||| | ||| ||||| |
|
|
| T |
3815913 |
cagcaactgttgaagggaacaatacagtcttcagtgaaaaagaatctttaacaagtagagtttcaactgatgaaggaagctcgggtaaagccacaagctt |
3816012 |
T |
|
| Q |
369 |
tgagcaaaatcgtatgtctaattttcttagtcttgtaagattcttgatgcttgaaggtatgctctcaatttcactgtatcttaaaaccag |
458 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
3816013 |
caagcaacctcgtatgtctagttttcttagtcttgtaagattcttgatgcttgaaggtatgatctcaatatcactgtatcttaaaaccag |
3816102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 172 - 453
Target Start/End: Original strand, 3808239 - 3808523
Alignment:
| Q |
172 |
aaattcatttgcagattcaacccaatatttatgagagaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgtt |
271 |
Q |
| |
|
||||| ||||| | ||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3808239 |
aaattgatttgaacattcaacccaacatttatgagagaactttcatccaagttcttgcaatgccagaactcaacacttttcttgttttccttgaattgtt |
3808338 |
T |
|
| Q |
272 |
cagaaactgttgaagggaacaatacagtcttcagtgatctaca--ttc-aacaagtagagtttcaactgatgaaggaagctcgggtagaaccaggagctt |
368 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
3808339 |
cagcaactgttgaagggaacaatacagtcttcagtgatctacagctgctaacaagtagagtttcaactgatgaaggaagctcgggtagagacagaagctt |
3808438 |
T |
|
| Q |
369 |
tgagcaaaatcgtatgtctaattttcttagtcttgtaagattcttgatgcttgaaggtatgctctcaatttcactgtatcttaaa |
453 |
Q |
| |
|
| |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
3808439 |
tttgcaaccttgtatgtctaattttcttagtcttgtaagatccttgatgcttgaaggtatgctctcaattttagtgtaacttaaa |
3808523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 3799920 - 3800230
Alignment:
| Q |
18 |
atcctttgttgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaatcaaagttatctttgtaatcaacataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||| ||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
3799920 |
atcctttgttgtcttgtactccaaccactatggaacactacttccagaataaacatacggtgcttgataagaagcaaagtaatcttt-----caacataa |
3800014 |
T |
|
| Q |
118 |
ctttcaacgtgatcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacccaatatttatgagagaatgttcat |
217 |
Q |
| |
|
|||||| | | | ||||||||||||||||||||||||||||| |||||| |||||||| || || |||||||||| | ||| |||||||||| |||| | |
|
|
| T |
3800015 |
ctttcagcatacttatgttccagtgtcgataaatgttgatatgcaaacttcatcaaattaatctgtagattcaaccaattatgtatgagagaaagttctt |
3800114 |
T |
|
| Q |
218 |
ccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaatacagtcttcagtgatctacattc |
317 |
Q |
| |
|
| |||||| |||||||||| || | |||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||| |||||||| || | | |
|
|
| T |
3800115 |
caaagttcaagcaattccaaaagttaatcattttcttgttttcctttaattgtccagcaactgttgaagggaacaatacagcattcagtgacttatagtg |
3800214 |
T |
|
| Q |
318 |
aacaagtagagtttca |
333 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3800215 |
aacaagtagagtttca |
3800230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 355
Target Start/End: Original strand, 4007952 - 4008300
Alignment:
| Q |
7 |
acaatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaatcaaagttatctttgt |
106 |
Q |
| |
|
|||||||| ||||||| |||||| |||||| |||||||||| |||| ||| ||| ||||| ||||| | ||||||||||||| |||| | | ||||| |
|
|
| T |
4007952 |
acaatcatatcatcctgtgttgttttgtacgccaaccactcaggaacggtacttcctggatacacataaaatgcttgataagaaccaaacgtttgtttgt |
4008051 |
T |
|
| Q |
107 |
aatcaacataactttcaacgtgatcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacccaatatttatgag |
206 |
Q |
| |
|
||||||||| ||||||||| | | ||||||||||||||||||||||||||||| |||||| || | ||| ||||| | ||||||| |||||||||| || |
|
|
| T |
4008052 |
aatcaacattactttcaacatagttatgttccagtgtcgataaatgttgatatgcaaacttcattatattgatttgaatattcaactcaatatttataag |
4008151 |
T |
|
| Q |
207 |
agaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaatacagtcttcagt |
306 |
Q |
| |
|
|||| ||| ||||| |||| | |||||||| ||| || ||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
4008152 |
agaacgtttatccaggttcaaacaattccataacagaacccttttcttgttttccttgaactgttcagaagctgttaaagggaaccatacagtcttcagt |
4008251 |
T |
|
| Q |
307 |
gatctacattcaacaagtagagtttcaactgatgaaggaagctcgggta |
355 |
Q |
| |
|
||| ||||||| | | ||||||||||| |||||| |||||||| |||| |
|
|
| T |
4008252 |
gattcacattcagccaatagagtttcaagtgatgatggaagctctggta |
4008300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 3998949 - 3999181
Alignment:
| Q |
9 |
aatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaatcaaagttatctttgtaa |
108 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| |||||| || ||| | ||| ||||||||||||| ||||||||||||| |||| |||| ||||||| |
|
|
| T |
3998949 |
aatcctgtcatcctttgttgttttgtactccaacgactctgaaacactgcttcctggataaacatacaatgcttgataagaaccaaacttatgtttgtaa |
3999048 |
T |
|
| Q |
109 |
tcaacataactttcaacgtgatcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattcatttgcagattcaacccaatatttatgagag |
208 |
Q |
| |
|
||||||| ||||||||| | | |||||||| |||||| |||||||||||| ||||||||| | ||| ||||| | ||||||| ||| ||||||| ||| |
|
|
| T |
3999049 |
tcaacattactttcaacatagttatgttccaatgtcgaataatgttgatatgcaaactttattatattgatttgaatattcaactcaacatttatgtgag |
3999148 |
T |
|
| Q |
209 |
aatgttcatccaagttccagcaattccagaact |
241 |
Q |
| |
|
|| ||| ||||| |||| | |||||||| |||| |
|
|
| T |
3999149 |
aacgtttatccaggttcaaacaattccataact |
3999181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 333
Target Start/End: Original strand, 4216948 - 4217203
Alignment:
| Q |
78 |
tgcttgataagaatcaaagttatctttgtaatcaacataactttcaacgtgatcatgttccagtgtcgataaatgttgatatgtaaactttatcaaattc |
177 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||||||||||| | | | ||||||||||||||||||||||||||||| |||| | ||| |||| |
|
|
| T |
4216948 |
tgcttgataagaagcaaagtaatcttt-----caacataactttcatcatacttatgttccagtgtcgataaatgttgatatgcaaacatcatctaatta |
4217042 |
T |
|
| Q |
178 |
atttgcagattcaacccaatatttatgagagaatgttcatccaag-----ttccagcaattccagaactcaatccttttcttgttttccttgaattgttc |
272 |
Q |
| |
|
|| || |||||||||| ||||| |||||||||| |||| || ||| ||| |||||||||| || | |||| |||||||||||||||| |||||| | |
|
|
| T |
4217043 |
atctgtagattcaaccaaatatgtatgagagaaagttcttcaaagttcaattcaagcaattccaaaagttaatcattttcttgttttcctttaattgtcc |
4217142 |
T |
|
| Q |
273 |
agaaactgttgaagggaacaatacagtcttcagtgatctacattcaacaagtagagtttca |
333 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| || | | |||||||||||||||| |
|
|
| T |
4217143 |
agcaactgttgaagggaacaatacagcattcagtgacttatagtgaacaagtagagtttca |
4217203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 329 - 439
Target Start/End: Complemental strand, 3935018 - 3934908
Alignment:
| Q |
329 |
tttcaactgatgaaggaagctcgggtagaaccaggagctttgagcaaaatcgtatgtctaattttcttagtcttgtaagattcttgatgcttgaaggtat |
428 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |||||| |||| | ||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3935018 |
tttcaactgataaaggaagctcgggtagagccagaagctttttgcaaccgcatatgtttaattttcttagtcttgtaagatccttgatgcttgaaggtat |
3934919 |
T |
|
| Q |
429 |
gctctcaattt |
439 |
Q |
| |
|
||||||||||| |
|
|
| T |
3934918 |
gctctcaattt |
3934908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 3936944 - 3936823
Alignment:
| Q |
172 |
aaattcatttgcagattcaacccaatatttatgagagaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgtt |
271 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
3936944 |
aaattgatttgaacattcaacccaatatttatgagagaacatttaatcaagttccagcaattccagaactcaactctttt-ttgttttcctttaattgtt |
3936846 |
T |
|
| Q |
272 |
cagaaactgttgaagggaacaat |
294 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
3936845 |
cagcaactgttgaagggaacaat |
3936823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 3815710 - 3815800
Alignment:
| Q |
9 |
aatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaatcaaagtta |
99 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| || |||| |||||||| |
|
|
| T |
3815710 |
aatcatatcatcctttgttgtcttgtactccaaccactctggaatactacttccaggatacacatacattgcttcatcagaaccaaagtta |
3815800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 3808134 - 3808226
Alignment:
| Q |
7 |
acaatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaatcaaagtta |
99 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||| ||||||| ||||| || |||| |||||||| |
|
|
| T |
3808134 |
acaatcttgtcatcctttgttgtcttgtactcaaaccactctggaacattacttccaggatacacatacattgcttcatcagaaccaaagtta |
3808226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 4216867 - 4216939
Alignment:
| Q |
18 |
atcctttgttgtcttgtactccaaccactctggaatactacctccaggataaacatacactgcttgataagaa |
90 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
4216867 |
atcctttgttgtcttgtactccaaccactatggaacactacttccagaataaacatacggtgcttgataagaa |
4216939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 3948740 - 3948628
Alignment:
| Q |
178 |
atttgcagattcaacccaatatttatgagagaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaa |
277 |
Q |
| |
|
||||||| ||| ||| ||||||| |||||||||||||||||| ||| |||||||| ||| ||| ||||||| |||| |||||| |||||||||||| |
|
|
| T |
3948740 |
atttgcaaattaaacacaatattcgcgagagaatgttcatccaatttcaagcaattcgcaaacacaacccttttcatgttctccttgcattgttcagaaa |
3948641 |
T |
|
| Q |
278 |
ctgttgaagggaacaa |
293 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3948640 |
---ttgaagggaacaa |
3948628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 4000155 - 4000196
Alignment:
| Q |
7 |
acaatcatgtcatcctttgttgtcttgtactccaaccactct |
48 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4000155 |
acaatcatgtcatcctctgttgtcttgtactccaaccactct |
4000196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 4016574 - 4016684
Alignment:
| Q |
194 |
caatatttatgagagaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaa |
293 |
Q |
| |
|
|||||||| ||| ||||| || ||||| ||| |||||||| ||| ||| ||||||| |||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
4016574 |
caatatttgcgagtgaatgctcgtccaatttcaagcaattcgcaaacacaacccttttcctgttctccttgaattgttcagcaa---ttgaagggaacaa |
4016670 |
T |
|
| Q |
294 |
tacagtcttcagtg |
307 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4016671 |
cacagtcttcagtg |
4016684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 207 - 439
Target Start/End: Original strand, 13396080 - 13396312
Alignment:
| Q |
207 |
agaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaatacagtcttcagt |
306 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| | |||| |||||||||||| ||||| ||||||| |
|
|
| T |
13396080 |
agaacgttcatccaagttcaagcaattccaaaactctatccttttcttgttttccttgaattgttcggtaacttttgaagggaacactacagacttcagt |
13396179 |
T |
|
| Q |
307 |
gatctacattcaacaagtagagtttcaactgatgaaggaagctcgggtagaaccaggagctttgagcaaaatcgtatgtctaattttcttagtcttgtaa |
406 |
Q |
| |
|
|| |||||||||||| ||||||||||| ||||||||||||| | |||| | |||| ||||||||||| ||| ||||||||| | |||| ||| ||||| |
|
|
| T |
13396180 |
gacttacattcaacaattagagtttcaagtgatgaaggaagcacaggtacagccagaagctttgagcagaattgtatgtctagtactcttcgtcgtgtaa |
13396279 |
T |
|
| Q |
407 |
gattcttgatgcttgaaggtatgctctcaattt |
439 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |
|
|
| T |
13396280 |
gattgatgatgcttgaaggtatactctcaattt |
13396312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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