View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504-Insertion-13 (Length: 436)
Name: NF1504-Insertion-13
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 146 - 434
Target Start/End: Complemental strand, 35846753 - 35846466
Alignment:
| Q |
146 |
ataaaaccgcattttattgttcctcgggcaataccatgatatatggtgtaaagatgggaagaaaattacaaaggtgtgtgtggggcattagcattaggtc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35846753 |
ataaaaccgcattttattgttcctcgggcaataccatgatatatggtgtaaagatgggaagaaaattacaaaggtgtgtgtggggcattagcattaggtc |
35846654 |
T |
|
| Q |
246 |
aca--tggtgaaggacagagataagggagaaaaacaatagtactaactgcacataagagccaaaagtcgtgaaatgcaatgcaaatagtttggtctttgc |
343 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35846653 |
acacatggtgaaggacagagataagggagaaaaacaatagtactaactgcacataagagccaaaagtcgtgaaatgcaatgcaaatagtttggtctttgc |
35846554 |
T |
|
| Q |
344 |
tccagaagtggaccattcatgatgtgattggtttgcaaaggtacgttgtaaactaatgcaaaaacccactgtggtatatgttgttcacatt |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35846553 |
tccagaagtggaccattcatgatgtgattggtttgcaaa-gtacgttgt-aactaatgc-aaaacccactgtggtatatgttgttcacatt |
35846466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 35847467 - 35847364
Alignment:
| Q |
7 |
atgtcttccaattaactagagaaaatcttataaaaaa-catgtgaaaatgtgagggattcaatcaaattgtttcaaattaattgaatcttttgtcggaaa |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35847467 |
atgtcttccaattaactagagaaaatcttataaaaaaacatgtgaaaatgtgagggattcaatcaaattgtttcaaattaattgaatc-tttgtcggaaa |
35847369 |
T |
|
| Q |
106 |
atcaa |
110 |
Q |
| |
|
||||| |
|
|
| T |
35847368 |
atcaa |
35847364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University