View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504-Insertion-14 (Length: 577)

Name: NF1504-Insertion-14
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504-Insertion-14
NF1504-Insertion-14
[»] chr8 (45 HSPs)
chr8 (287-447)||(26144496-26144663)
chr8 (287-450)||(16235632-16235802)
chr8 (449-572)||(26144705-26144829)
chr8 (449-577)||(16235463-16235592)
chr8 (449-577)||(26145723-26145852)
chr8 (288-450)||(16234287-16234456)
chr8 (164-255)||(32638832-32638923)
chr8 (7-70)||(8171047-8171110)
chr8 (312-379)||(26145917-26145984)
chr8 (7-70)||(40412657-40412720)
chr8 (165-251)||(16384683-16384768)
chr8 (116-222)||(40412508-40412614)
chr8 (129-238)||(8171170-8171278)
chr8 (165-241)||(12580520-12580596)
chr8 (197-251)||(4246006-4246059)
chr8 (161-251)||(32759439-32759528)
chr8 (199-255)||(5539485-5539541)
chr8 (165-240)||(22201304-22201379)
chr8 (197-240)||(36483511-36483554)
chr8 (8-71)||(37669199-37669262)
chr8 (23-71)||(4246558-4246606)
chr8 (23-71)||(5540051-5540099)
chr8 (23-71)||(34900810-34900858)
chr8 (23-71)||(43771155-43771203)
chr8 (23-71)||(45216661-45216709)
chr8 (165-240)||(34901349-34901424)
chr8 (8-71)||(36484054-36484117)
chr8 (197-240)||(45217219-45217262)
chr8 (197-251)||(2872909-2872962)
chr8 (197-239)||(32424998-32425040)
chr8 (197-251)||(32877503-32877556)
chr8 (197-251)||(43771703-43771756)
chr8 (23-71)||(28876006-28876054)
chr8 (8-71)||(12579961-12580024)
chr8 (198-241)||(13422283-13422326)
chr8 (197-255)||(12357939-12357997)
chr8 (197-255)||(12359067-12359125)
chr8 (287-337)||(16237155-16237205)
chr8 (197-251)||(25022191-25022244)
chr8 (197-239)||(28876565-28876607)
chr8 (199-241)||(37372334-37372376)
chr8 (197-239)||(42949207-42949249)
chr8 (514-577)||(16234472-16234536)
chr8 (197-241)||(27886265-27886309)
chr8 (197-241)||(27944923-27944967)
[»] chr4 (35 HSPs)
chr4 (110-281)||(39957600-39957770)
chr4 (110-188)||(24784367-24784445)
chr4 (162-251)||(52122833-52122921)
chr4 (7-67)||(24784489-24784549)
chr4 (7-70)||(39957802-39957865)
chr4 (197-255)||(38492268-38492326)
chr4 (165-251)||(19738763-19738848)
chr4 (7-61)||(52721477-52721531)
chr4 (161-250)||(53322404-53322492)
chr4 (23-71)||(31226969-31227017)
chr4 (163-255)||(36943730-36943822)
chr4 (8-71)||(53322971-53323034)
chr4 (8-66)||(52572826-52572884)
chr4 (163-241)||(52721339-52721417)
chr4 (163-240)||(31946191-31946268)
chr4 (165-241)||(3403552-3403628)
chr4 (23-71)||(8063536-8063584)
chr4 (163-239)||(24793696-24793772)
chr4 (165-240)||(8064076-8064151)
chr4 (23-66)||(14795643-14795686)
chr4 (197-240)||(36511933-36511976)
chr4 (8-71)||(41146236-41146299)
chr4 (197-251)||(5325720-5325773)
chr4 (163-241)||(40694145-40694223)
chr4 (197-251)||(42472568-42472621)
chr4 (198-251)||(17892314-17892366)
chr4 (197-241)||(4400543-4400587)
chr4 (197-241)||(5834905-5834949)
chr4 (197-241)||(21637740-21637784)
chr4 (197-240)||(37992532-37992575)
chr4 (197-240)||(41145688-41145731)
chr4 (203-240)||(14795078-14795115)
chr4 (23-71)||(3403013-3403061)
chr4 (197-249)||(4119504-4119556)
chr4 (7-71)||(52122362-52122426)
[»] chr3 (43 HSPs)
chr3 (110-255)||(2567310-2567454)
chr3 (116-240)||(52684277-52684401)
chr3 (161-255)||(22611347-22611441)
chr3 (7-70)||(21006304-21006367)
chr3 (7-67)||(2567210-2567270)
chr3 (197-259)||(1528549-1528611)
chr3 (197-255)||(53192549-53192607)
chr3 (22-70)||(52684441-52684489)
chr3 (165-251)||(40497396-40497481)
chr3 (197-251)||(45532979-45533032)
chr3 (23-71)||(10224590-10224638)
chr3 (163-251)||(28968576-28968663)
chr3 (165-241)||(37996778-37996854)
chr3 (163-255)||(47642068-47642159)
chr3 (197-241)||(52505832-52505876)
chr3 (8-71)||(25936502-25936565)
chr3 (23-66)||(48123460-48123503)
chr3 (197-251)||(1679697-1679750)
chr3 (197-255)||(10225161-10225218)
chr3 (197-239)||(45347374-45347416)
chr3 (23-71)||(1679120-1679168)
chr3 (197-241)||(7899718-7899762)
chr3 (163-240)||(13748413-13748489)
chr3 (200-251)||(42464909-42464959)
chr3 (8-71)||(45532486-45532549)
chr3 (197-251)||(7327778-7327831)
chr3 (197-255)||(19349599-19349657)
chr3 (163-241)||(19421491-19421569)
chr3 (197-251)||(35389816-35389869)
chr3 (197-251)||(42229740-42229793)
chr3 (129-255)||(21006424-21006552)
chr3 (198-259)||(53165509-53165570)
chr3 (164-241)||(55268982-55269059)
chr3 (197-241)||(3983772-3983816)
chr3 (163-255)||(19879068-19879160)
chr3 (23-71)||(28705368-28705416)
chr3 (164-240)||(28882644-28882720)
chr3 (197-241)||(48122900-48122944)
chr3 (197-252)||(5271533-5271588)
chr3 (197-251)||(33240016-33240069)
chr3 (197-239)||(52121257-52121299)
chr3 (198-239)||(30787562-30787603)
chr3 (197-241)||(41742071-41742115)
[»] chr2 (32 HSPs)
chr2 (116-243)||(45159227-45159353)
chr2 (197-255)||(20536826-20536884)
chr2 (162-251)||(33324884-33324972)
chr2 (7-70)||(45159117-45159180)
chr2 (162-251)||(38602286-38602374)
chr2 (8-71)||(4169946-4170009)
chr2 (165-251)||(7876780-7876865)
chr2 (8-71)||(6497096-6497159)
chr2 (197-251)||(16561866-16561919)
chr2 (197-251)||(22484333-22484386)
chr2 (197-251)||(40308896-40308949)
chr2 (198-259)||(14824195-14824256)
chr2 (163-255)||(3563902-3563993)
chr2 (197-241)||(4170501-4170545)
chr2 (23-71)||(6124796-6124844)
chr2 (197-241)||(6497648-6497692)
chr2 (23-71)||(22484898-22484946)
chr2 (23-71)||(40308277-40308325)
chr2 (197-240)||(1776435-1776478)
chr2 (197-240)||(8482916-8482959)
chr2 (197-251)||(4561854-4561907)
chr2 (197-251)||(6124239-6124292)
chr2 (197-238)||(2319353-2319394)
chr2 (197-250)||(7807373-7807425)
chr2 (198-255)||(40536293-40536350)
chr2 (197-241)||(35342392-35342436)
chr2 (197-241)||(44156672-44156716)
chr2 (197-239)||(18301049-18301091)
chr2 (199-251)||(22571003-22571054)
chr2 (197-241)||(31236185-31236229)
chr2 (197-241)||(34146255-34146299)
chr2 (197-241)||(40497384-40497428)
[»] chr7 (43 HSPs)
chr7 (129-251)||(25969460-25969582)
chr7 (129-251)||(9250351-9250474)
chr7 (164-255)||(36202754-36202845)
chr7 (164-255)||(42897050-42897140)
chr7 (7-61)||(9283802-9283856)
chr7 (7-61)||(25969627-25969681)
chr7 (162-240)||(38263072-38263150)
chr7 (160-251)||(48163471-48163561)
chr7 (165-251)||(27353984-27354069)
chr7 (165-251)||(27555336-27555421)
chr7 (197-255)||(39520848-39520905)
chr7 (7-61)||(47720029-47720083)
chr7 (161-237)||(11829765-11829841)
chr7 (197-241)||(47720171-47720215)
chr7 (8-71)||(11058558-11058621)
chr7 (8-71)||(11830319-11830382)
chr7 (165-240)||(16850859-16850934)
chr7 (8-71)||(36661095-36661158)
chr7 (7-61)||(9250251-9250304)
chr7 (197-255)||(47238616-47238674)
chr7 (23-71)||(40096288-40096336)
chr7 (8-71)||(27397541-27397604)
chr7 (165-240)||(34238231-34238306)
chr7 (165-240)||(40095723-40095798)
chr7 (197-251)||(34122616-34122669)
chr7 (110-172)||(47720094-47720156)
chr7 (197-241)||(16564378-16564422)
chr7 (197-241)||(16601240-16601284)
chr7 (163-239)||(26973127-26973203)
chr7 (197-240)||(1043070-1043113)
chr7 (160-239)||(26773674-26773753)
chr7 (198-241)||(35159937-35159980)
chr7 (197-255)||(554889-554947)
chr7 (197-239)||(1363011-1363053)
chr7 (197-255)||(36660536-36660594)
chr7 (198-243)||(7416684-7416729)
chr7 (168-241)||(26845866-26845939)
chr7 (198-239)||(27688010-27688051)
chr7 (197-241)||(21409463-21409507)
chr7 (197-241)||(23311794-23311838)
chr7 (197-233)||(27398046-27398082)
chr7 (198-238)||(40041454-40041494)
chr7 (197-241)||(44960134-44960178)
[»] chr5 (37 HSPs)
chr5 (129-251)||(30777452-30777574)
chr5 (116-255)||(6243085-6243225)
chr5 (162-251)||(32707795-32707883)
chr5 (7-70)||(6242984-6243047)
chr5 (7-61)||(30777351-30777405)
chr5 (197-251)||(1639781-1639834)
chr5 (197-255)||(7977302-7977360)
chr5 (197-251)||(11906284-11906337)
chr5 (166-251)||(32624943-32625027)
chr5 (23-71)||(26794432-26794480)
chr5 (197-255)||(12852170-12852227)
chr5 (163-241)||(26716348-26716426)
chr5 (197-255)||(26795003-26795060)
chr5 (163-241)||(26986088-26986166)
chr5 (165-251)||(39690730-39690815)
chr5 (23-71)||(9792927-9792975)
chr5 (8-71)||(1639213-1639276)
chr5 (197-240)||(1795468-1795511)
chr5 (197-251)||(9792385-9792438)
chr5 (8-70)||(11907405-11907467)
chr5 (163-241)||(17138219-17138297)
chr5 (197-251)||(32728708-32728761)
chr5 (197-241)||(33829828-33829872)
chr5 (23-71)||(39690170-39690218)
chr5 (197-240)||(3934787-3934830)
chr5 (197-240)||(14836457-14836500)
chr5 (197-240)||(21251541-21251584)
chr5 (198-241)||(30284607-30284650)
chr5 (163-241)||(26691691-26691769)
chr5 (163-241)||(26961423-26961501)
chr5 (165-251)||(41392679-41392764)
chr5 (164-241)||(34032444-34032521)
chr5 (23-71)||(12852741-12852789)
chr5 (197-241)||(19102464-19102508)
chr5 (197-233)||(27938242-27938278)
chr5 (7-71)||(32707324-32707388)
chr5 (27-71)||(33830392-33830436)
[»] chr1 (35 HSPs)
chr1 (165-255)||(36367669-36367759)
chr1 (162-251)||(1043293-1043381)
chr1 (162-240)||(1036535-1036613)
chr1 (8-71)||(25257237-25257300)
chr1 (197-251)||(20409553-20409606)
chr1 (165-251)||(28949208-28949293)
chr1 (165-251)||(37104186-37104271)
chr1 (197-250)||(8132250-8132302)
chr1 (163-240)||(28659265-28659342)
chr1 (23-71)||(3427469-3427517)
chr1 (23-71)||(6916303-6916351)
chr1 (23-71)||(8132801-8132849)
chr1 (23-71)||(38331068-38331116)
chr1 (23-71)||(52895142-52895190)
chr1 (197-240)||(2364753-2364796)
chr1 (165-240)||(6916841-6916916)
chr1 (23-66)||(30324344-30324387)
chr1 (165-240)||(38330503-38330578)
chr1 (165-240)||(52895680-52895755)
chr1 (197-251)||(3426914-3426967)
chr1 (197-251)||(13012991-13013044)
chr1 (197-251)||(25256682-25256735)
chr1 (197-251)||(30323781-30323834)
chr1 (197-251)||(31653401-31653454)
chr1 (197-239)||(38948809-38948851)
chr1 (197-238)||(38218461-38218502)
chr1 (198-238)||(14167162-14167202)
chr1 (23-71)||(28948648-28948696)
chr1 (21-71)||(5984806-5984856)
chr1 (197-251)||(37346847-37346900)
chr1 (199-248)||(9092494-9092543)
chr1 (197-238)||(34432382-34432423)
chr1 (197-237)||(5984306-5984346)
chr1 (197-241)||(14334235-14334279)
chr1 (197-237)||(32381058-32381098)
[»] scaffold0640 (2 HSPs)
scaffold0640 (162-251)||(8056-8144)
scaffold0640 (7-71)||(7580-7644)
[»] chr6 (18 HSPs)
chr6 (162-251)||(8357024-8357112)
chr6 (9-70)||(32018218-32018279)
chr6 (199-259)||(7254977-7255037)
chr6 (7-61)||(3212692-3212746)
chr6 (8-71)||(8357511-8357574)
chr6 (8-71)||(22989051-22989114)
chr6 (8-71)||(23799282-23799345)
chr6 (197-251)||(3212543-3212596)
chr6 (165-251)||(31195836-31195921)
chr6 (163-240)||(19128229-19128306)
chr6 (23-71)||(1036255-1036303)
chr6 (23-71)||(7188219-7188267)
chr6 (199-259)||(10894584-10894644)
chr6 (165-240)||(1036793-1036868)
chr6 (197-238)||(7188778-7188819)
chr6 (197-241)||(32130658-32130702)
chr6 (197-250)||(21113579-21113632)
chr6 (197-237)||(32018056-32018096)
[»] scaffold0177 (2 HSPs)
scaffold0177 (197-255)||(25540-25597)
scaffold0177 (7-71)||(25042-25106)
[»] scaffold0037 (2 HSPs)
scaffold0037 (197-255)||(27790-27848)
scaffold0037 (27-71)||(27229-27273)
[»] scaffold0250 (1 HSPs)
scaffold0250 (164-251)||(5578-5664)
[»] scaffold0005 (2 HSPs)
scaffold0005 (23-66)||(44045-44088)
scaffold0005 (203-240)||(44616-44653)
[»] scaffold0112 (2 HSPs)
scaffold0112 (197-255)||(42075-42132)
scaffold0112 (8-71)||(41508-41571)
[»] scaffold0060 (1 HSPs)
scaffold0060 (165-251)||(30411-30496)
[»] scaffold0406 (1 HSPs)
scaffold0406 (197-241)||(13931-13975)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 287 - 447
Target Start/End: Original strand, 26144496 - 26144663
Alignment:
Q  287 ctgcctagtgtatttttctgcttaatttcaaatagaaatgtgtgttcttgaatataattgcttttgccccaaattaattgtagttttgatgtata----- 381  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |         
T  26144496 ctgcctagtgtatgtttctgcttaatttcaaatagaaatgtgtgttcttgaatataattgcttttgccccaaatgaattgtagttttgatgtaaatgata 26144595  T
Q  382 --gatcattcctagttgattttgcaatgtttaatcattgaaatggtttgcagtcttcatttcagttaa 447  Q
      ||| |||| | |||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  26144596 ctgataattcttggttggttttgcaatgtttaatcattgaaatggtttgcaatcttcatttaagttaa 26144663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 287 - 450
Target Start/End: Complemental strand, 16235802 - 16235632
Alignment:
Q  287 ctgcctagtgtatttttctgcttaatttcaaatagaaatgtgtgttcttgaatataattgcttttgccccaaattaattgtagttttgatg-------ta 379  Q
    ||||||||| ||| |||| ||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||| | ||||||||||||||       ||    
T  16235802 ctgcctagtctatgtttccgcttaattttaaatagaaatgtatgttcttaaatataattgcttttgtcccaaatgatttgtagttttgatgtaattgata 16235703  T
Q  380 tagatcattcctagttgattttgcaatgtttaatcattgaaatggtttgcagtcttcatttcagttaactt 450  Q
    | |||||||| | |||| ||||||||||| |||||||||||||| ||||||  ||||||||||||||||||    
T  16235702 ttgatcattcttggttggttttgcaatgtataatcattgaaatgatttgcatacttcatttcagttaactt 16235632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 449 - 572
Target Start/End: Original strand, 26144705 - 26144829
Alignment:
Q  449 tttattagttgtatctttaaattctcatatgtaatgcacattattgacattttgtacgaataaacttgtgtgatttaaataatttctatgaaacagtaat 548  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||    
T  26144705 tttattagttgtatctttaaattctcatctgtggtgcacattattgacattttgttcttttaaacttgtgtgatttaaataatttctatgaaacagtaat 26144804  T
Q  549 tgcaagg-gagcatcaaggattttg 572  Q
    | ||||| ||| || ||||||||||    
T  26144805 tacaaggagaggataaaggattttg 26144829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 449 - 577
Target Start/End: Complemental strand, 16235592 - 16235463
Alignment:
Q  449 tttattagttgtatctttaaattctcatatgtaatgcacattattgacattttgtacgaataaacttgtgtgatttaaataatttctatgaaacagtaat 548  Q
    ||||||||||||||||| |||||||||| |||  ||||||||||||||||||||| |   ||||||||||||||||||| ||||||||||||||||||||    
T  16235592 tttattagttgtatcttcaaattctcatttgtggtgcacattattgacattttgttcatttaaacttgtgtgatttaaagaatttctatgaaacagtaat 16235493  T
Q  549 tgcaagg-gagcatcaaggattttgtggtt 577  Q
    ||||||| ||| || ||| |||||||||||    
T  16235492 tgcaaggagaggataaagaattttgtggtt 16235463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 449 - 577
Target Start/End: Complemental strand, 26145852 - 26145723
Alignment:
Q  449 tttattagttgtatctttaaattctcatatgtaatgcacattattgacattttgtacgaataaacttgtgtgatttaaataatttctatgaaacagtaat 548  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||||||||||| |   || |||||| ||||||||||||||||||||||||||||||    
T  26145852 tttattagttgtatctttaaattctcatttgtggtgcacattattgacattttgttcatttagacttgtttgatttaaataatttctatgaaacagtaat 26145753  T
Q  549 tgcaagg-gagcatcaaggattttgtggtt 577  Q
    |||||||  || || |||||||||||||||    
T  26145752 tgcaaggaaaggataaaggattttgtggtt 26145723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 288 - 450
Target Start/End: Original strand, 16234287 - 16234456
Alignment:
Q  288 tgcctagtgtatttttctgcttaatttcaaatagaaatgtgtgttcttgaatataattgcttttgccccaaattaattgtagttttgatgtata------ 381  Q
    |||||||||||| |||| ||||||||| |||||||  |||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |          
T  16234287 tgcctagtgtatgtttccgcttaattttaaatagagctgtgtgttcttgaatataattgtttttgccccaaatgaatagtagttttgatgtaaatgatac 16234386  T
Q  382 -gatcattcctagttgattttgcaatgtttaatcattgaaatggtttgcagtcttcatttcagttaactt 450  Q
     |||||||| | |||| ||||||||||| |||||||| ||| | ||| | ||||||||||||| ||||||    
T  16234387 tgatcattcttggttggttttgcaatgtctaatcattcaaacgattttccgtcttcatttcagataactt 16234456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 32638832 - 32638923
Alignment:
Q  164 cgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    |||||||||||||||||||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  32638832 cgtatcggaaagtatcagataattatttttttaaaaaataaaatttaatatttggatactctccggatacgtatcgggcaggtatcggtgca 32638923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 8171047 - 8171110
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaa 70  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8171047 acaagatacaaagcagcttccaaatctggttcatccaaagacaactctactaactcaattacaa 8171110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 312 - 379
Target Start/End: Complemental strand, 26145984 - 26145917
Alignment:
Q  312 tttcaaatagaaatgtgtgttcttgaatataattgcttttgccccaaattaattgtagttttgatgta 379  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||||    
T  26145984 tttcaaatagaaatgtgtgttcttgcatataattgcttttgccccaaatgaattatatttttgatgta 26145917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 40412720 - 40412657
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaa 70  Q
    |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40412720 acaagatacaaaccagcttccaaatctggttcatccaaagataactctactaactcaattacaa 40412657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 16384768 - 16384683
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  16384768 gtatcggaaagtatcggataattatttttttaaaaaataaaatttaatatttggatactcttcggatacgtatcggg-aagtatcgg 16384683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 40412614 - 40412508
Alignment:
Q  116 tatctgtgcatagcggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatatt 215  Q
    |||| |||| || ||||||||||||||||||| | ||||||||  |||||||||| |||||||| ||||||||        |||||||||||||||||||    
T  40412614 tatccgtgcgtatcggaacaaatagaagtatcatccgcgtatccgggacgtatcgaaaagtatcggataattatttttttaaaaaataaaatttaatatt 40412515  T
Q  216 cggatac 222  Q
    |||||||    
T  40412514 cggatac 40412508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 8171170 - 8171278
Alignment:
Q  129 cggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcg 228  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||| ||||  |||||||         |||||||||||||||||||||||||||| |     
T  8171170 cggaacaaatagaagtatccttcgcgtatccgggatgtatcggaaattatcgaataattatttttttttaaaataaaatttaatattcggatactctac- 8171268  T
Q  229 gatacgtatc 238  Q
    ||||||||||    
T  8171269 gatacgtatc 8171278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 12580520 - 12580596
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||||||||||        ||||||||||||||||||| ||||||||| |||||||||||||||    
T  12580520 gtatcggaaagtatcagataattatattttaaaaaaataaaatttaatatttggatactctccggatacgtatcggg 12580596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 4246059 - 4246006
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  4246059 aaaaataaaatttaatatttggatactcttcggatacgtatcggg-aagtatcgg 4246006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 32759528 - 32759439
Alignment:
Q  161 ggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||    
T  32759528 ggacgtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccagatacgtatcggg-aagtatcgg 32759439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 5539541 - 5539485
Alignment:
Q  199 aaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||||||    
T  5539541 aaataaaatttaatatttggatactctccggatacatatcgggcaggtatcggtgca 5539485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 22201304 - 22201379
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||    
T  22201304 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcgg 22201379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 36483554 - 36483511
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  36483554 aaaaataaaatttaatatttggatactcttcggatacgtatcgg 36483511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 37669262 - 37669199
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  37669262 caagatacaaatcagcttccaaatccggttcatccaaagacaactctgctaactcaattccaac 37669199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 4246606 - 4246558
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  4246606 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 4246558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 5540099 - 5540051
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  5540099 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 5540051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 34900810 - 34900858
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  34900810 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 34900858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 43771155 - 43771203
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  43771155 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 43771203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 45216661 - 45216709
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  45216661 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 45216709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 34901349 - 34901424
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||| ||||||||        |||||||||||||||||||  |||||||| ||||||||||||||    
T  34901349 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttagatactctccggatacgtatcgg 34901424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 36484117 - 36484054
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||| | ||||||||| ||||    
T  36484117 caagatacaaatcagcttccaaatccggttcatccaaagacaactctgccaactcaattccaac 36484054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 45217219 - 45217262
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  45217219 aaaaataaaatttaatatttggatactctccggatacgtatcgg 45217262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 2872909 - 2872962
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||||    
T  2872909 aaaaataaaatttcatatttggatactctccggatacgtatcggg-aagtatcgg 2872962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 32425040 - 32424998
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    |||||||||||||||| |||||||||||||| |||||||||||    
T  32425040 aaaaataaaatttaatcttcggatactcttctgatacgtatcg 32424998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 32877556 - 32877503
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||    
T  32877556 aaaaataaaatttaatatttggatactctcccgatacgtatcggg-aagtatcgg 32877503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 43771703 - 43771756
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| |||||||||||| || |||||||||    
T  43771703 aaaaataaaatttaatatttggatactctccggatacgtatcagg-aagtatcgg 43771756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 28876006 - 28876054
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||||| |||||| |||||||||||| ||||||||||| ||||    
T  28876006 cttccaaatctgattcatctaaagacaactctgctaactcaattccaac 28876054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 12579961 - 12580024
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| |||||||||||||||| |||| || |||||||| ||||    
T  12579961 caagatacaaatcagcttccaaatccggttcatccaaagacagctctgctgactcaattccaac 12580024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 13422326 - 13422283
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||||| ||||||||| || ||||||||||||    
T  13422326 aaaataaaatttaatatttggatactctccgtatacgtatcggg 13422283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 12357997 - 12357939
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||| | | ||||||||||||| |  ||||||||||    
T  12357997 aaaaataaaatttaatatttggatactatgctgatacgtatcgggaagatatcggtgca 12357939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 12359125 - 12359067
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||| | | ||||||||||||| |  ||||||||||    
T  12359125 aaaaataaaatttaatatttggatactatgctgatacgtatcgggaagatatcggtgca 12359067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 16237205 - 16237155
Alignment:
Q  287 ctgcctagtgtatttttctgcttaatttcaaatagaaatgtgtgttcttga 337  Q
    ||||||||| ||| |||| |||||||||||||||||||||  |||||||||    
T  16237205 ctgcctagtatatgtttccgcttaatttcaaatagaaatggatgttcttga 16237155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 25022244 - 25022191
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| | |||||||||| || |||||||||    
T  25022244 aaaaataaaatttaatatttggatactctcccgatacgtatcagg-aagtatcgg 25022191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 28876565 - 28876607
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    ||||||||||||||||||| |||||||||  ||||||||||||    
T  28876565 aaaaataaaatttaatatttggatactctctggatacgtatcg 28876607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 37372376 - 37372334
Alignment:
Q  199 aaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||| |||||||||||| | |||||||||||||    
T  37372376 aaataaaatttaatcttcggatactctcctgatacgtatcggg 37372334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 42949249 - 42949207
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    ||||||||||||||||||| ||||||||| | |||||||||||    
T  42949249 aaaaataaaatttaatatttggatactctcccgatacgtatcg 42949207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 577
Target Start/End: Original strand, 16234472 - 16234536
Alignment:
Q  514 ttgtgtgatttaaataatttctatgaaacagtaattgc-aagggagcatcaaggattttgtggtt 577  Q
    |||||||||||||||||||| ||||||||| ||||| | |||  || || |||||||||||||||    
T  16234472 ttgtgtgatttaaataatttatatgaaacaataattccaaagaaaggataaaggattttgtggtt 16234536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 27886309 - 27886265
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||| |||||| |||||||||||| | |||||||||||||    
T  27886309 aaaaataaactttaatcttcggatactctcctgatacgtatcggg 27886265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 27944967 - 27944923
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||| |||||| |||||||||||| | |||||||||||||    
T  27944967 aaaaataaactttaatcttcggatactctcctgatacgtatcggg 27944923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 110 - 281
Target Start/End: Complemental strand, 39957770 - 39957600
Alignment:
Q  110 cacatttatctgtgcatagcggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaattt 209  Q
    |||| |||||||||| || || |||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||        |||||||||||||    
T  39957770 cacacttatctgtgcgtatcgtaacaaatagaagtatccttcgcgtatccgggacgtatcggaaagtatcggataattattttttaaaaaaataaaattt 39957671  T
Q  210 aatattcggatactcttcggatacgtatcgggcaagtatcggtgcatgatccattttcaagtatcggggctt 281  Q
    |||||||||||||||| ||||||||||||| | |||||||||  ||| ||||||||| ||||||||||||||    
T  39957670 aatattcggatactctccggatacgtatcgag-aagtatcggaacatcatccattttaaagtatcggggctt 39957600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 24784445 - 24784367
Alignment:
Q  110 cacatttatctgtgcatagcggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataatta 188  Q
    |||| |||||||||| ||  ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  24784445 cacacttatctgtgcgtattggaacaaatagaagtatccttcgcgtatccaggatgtatcggaaagtatctgataatta 24784367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 52122833 - 52122921
Alignment:
Q  162 gacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  52122833 gacgtatcggaaagtatcagataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 52122921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 24784549 - 24784489
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaatta 67  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  24784549 acaagatacaaaccagcttccaaatctggttcatccaaagacaactttactaactcaatta 24784489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 39957865 - 39957802
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaa 70  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||||||||    
T  39957865 acaagatacaaactagcttccaaatctggttcatccaaagacaactctattagctcaattacaa 39957802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 38492268 - 38492326
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  38492268 aaaaataaaatttaatatttggatactctccggatacgtatcgggcaggtatcggtgca 38492326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 19738848 - 19738763
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  19738848 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 19738763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 52721531 - 52721477
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaact 61  Q
    |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||    
T  52721531 acaagatacaaaccagctttcaaatctggttcatccaaagacaactctactaact 52721477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 53322492 - 53322404
Alignment:
Q  161 ggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcg 250  Q
    |||| |||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  53322492 ggacatatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcg 53322404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 31227017 - 31226969
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  31227017 cttccaaatctggttcatccaaagacaactctgctaactcaattccaac 31226969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 36943822 - 36943730
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||| | ||||||||||||||||        ||||||||| |||||| |||||||||||||| ||||||||||||| | |||||||||||    
T  36943822 acgtatcaggaagtatcagataattatttttaaaaaaaataaattttaatcttcggatactcttctgatacgtatcgggtaggtatcggtgca 36943730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 53323034 - 53322971
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  53323034 caagatacaaattagcttccaaatccggttcatccaaagacaactctgctaactcaattccaac 53322971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 52572884 - 52572826
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaatt 66  Q
    ||||||| |||  ||||||||||| |||||||||||||||||||||| |||||||||||    
T  52572884 caagatacaaatcagcttccaaatatggttcatccaaagacaactctgctaactcaatt 52572826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 52721417 - 52721339
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| || ||||||||||||    
T  52721417 acgtatcggaaagtatcggataattattttataaaaaaataaaatttaatatttggatactctccgaatacgtatcggg 52721339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 31946191 - 31946268
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||| ||||||| ||||||||        |||||||||||||||| |||||||||||||| ||||||||||||    
T  31946191 acgtatcgggaagtatcggataattattttttttaaaaataaaatttaatcttcggatactcttctgatacgtatcgg 31946268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 3403552 - 3403628
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||| ||||||||         |||||||||||||||||| ||||||||| |||||||||||||||    
T  3403552 gtatcggaaagtatcggataattatttttttttaaaataaaatttaatatttggatactctccggatacgtatcggg 3403628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 8063536 - 8063584
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  8063536 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 8063584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 24793696 - 24793772
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    |||||| || ||||||||||||||||        |||||||||||||||| |||||||||||||| |||||||||||    
T  24793696 acgtattgggaagtatcagataattatttttttaaaaaataaaatttaatcttcggatactcttctgatacgtatcg 24793772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 8064076 - 8064151
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||| ||||||||        |||||||||||||||||||  |||||||| ||||||||||||||    
T  8064076 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttagatactctccggatacgtatcgg 8064151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 14795686 - 14795643
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaatt 66  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  14795686 cttccaaatccggttcatccaaagacaactctgctaactcaatt 14795643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 36511933 - 36511976
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  36511933 aaaaataaaatttaatcttcggatactcttctgatacgtatcgg 36511976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 41146299 - 41146236
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| || |||||||||||||||||| ||||||||||| ||||    
T  41146299 caagatacaaatcagcttccaaatccggatcatccaaagacaactctgctaactcaattccaac 41146236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 5325720 - 5325773
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||    
T  5325720 aaaaataaaatttaatatttggatactctccagatacgtatcggg-aagtatcgg 5325773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 40694223 - 40694145
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||| ||||||||||||||||        |||||||||||||||| ||| |||||||| | |||||||||||||    
T  40694223 acgtatcgggaagtatcagataattattttataaaaaaataaaatttaatcttcagatactctcctgatacgtatcggg 40694145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 42472568 - 42472621
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||| |||||||||    
T  42472568 aaaaataaaatttaatatttggatactctccggatacgtattggg-aagtatcgg 42472621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 17892366 - 17892314
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||    
T  17892366 aaaataaaatttaatcttcggatactcttctgatacatatcggg-aagtatcgg 17892314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 4400587 - 4400543
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||||||| |||||||| | |||||||||||||    
T  4400587 aaaaataaaatttaatattctgatactctcctgatacgtatcggg 4400543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 5834949 - 5834905
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||    
T  5834949 aaaaataaaatttaatatttggatactctcccgatacgtatcggg 5834905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 21637784 - 21637740
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||| |||||||||||| | |||||||||||||    
T  21637784 aaaaataaaatttaatcttcggatactctcctgatacgtatcggg 21637740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 37992532 - 37992575
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    |||||||||||||||| || ||||||||||| ||||||||||||    
T  37992532 aaaaataaaatttaatctttggatactcttctgatacgtatcgg 37992575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 41145731 - 41145688
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||||||| ||||||||| || |||||||||||    
T  41145731 aaaaataaaatttaatatttggatactctccgaatacgtatcgg 41145688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 14795115 - 14795078
Alignment:
Q  203 aaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  14795115 aaaatttaatatttggatactctccggatacgtatcgg 14795078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 3403013 - 3403061
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||| ||||||| | ||||||||||| ||||    
T  3403013 cttccaaatccggttcatccaaggacaactttgctaactcaattccaac 3403061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 4119504 - 4119556
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatc 249  Q
    ||||||||||||||||  ||||||||||| | |||||||||| |||| |||||    
T  4119504 aaaaataaaatttaattgtcggatactctcccgatacgtatcaggcaggtatc 4119556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 52122362 - 52122426
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||| |||  ||||||| |||| ||||||| ||||||||||| | ||||||||||| ||||    
T  52122362 acaagatacaaatcagcttcctaatccggttcattcaaagacaactatgctaactcaattccaac 52122426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 110 - 255
Target Start/End: Original strand, 2567310 - 2567454
Alignment:
Q  110 cacatttatctgtgcatagcggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaattt 209  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||   ||| ||||||||||||||| ||||||||        |||||||||||||    
T  2567310 cacacttatctgtgcgtagcggaataaatagaagtatccttcgcgtattcgggatgtatcggaaagtatcggataattatttttttaaaaaataaaattt 2567409  T
Q  210 aatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||    
T  2567410 aatattcggatactctctggatacgtatcggg-aagtatcggtgca 2567454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 52684401 - 52684277
Alignment:
Q  116 tatctgtgcatagcggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatatt 215  Q
    |||| |||| || |||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||        |||||||||||||||||||    
T  52684401 tatccgtgcgtatcggaacaaatagaagtatcctttgcgtatccaggacgtatcggaaaatatcggataattattttttttaaaaataaaatttaatatt 52684302  T
Q  216 cggatactcttcggatacgtatcgg 240  Q
    |||||||||| |  |||||||||||    
T  52684301 cggatactctcctaatacgtatcgg 52684277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 22611347 - 22611441
Alignment:
Q  161 ggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  22611347 ggacgtatcggaaagtatcggataattatttttttaaaaaataaaatttaatatttggatactctccggatacgtatcgggcaggtatcggtgca 22611441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 21006304 - 21006367
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaa 70  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21006304 acaatatacaaaccagcttccaaatctggttcatccaaagacaactctactaactcaattacaa 21006367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 2567210 - 2567270
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaatta 67  Q
    |||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  2567210 acaagatacaaaccaacttccaaatctggttcatccaaagacaactctactaactcaatta 2567270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 1528611 - 1528549
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgcatgat 259  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||||    
T  1528611 aaaaataaaatttaatatttggatactctccggatacgtatcgggcaggtatcgatgcatgat 1528549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 53192607 - 53192549
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  53192607 aaaaataaaatttaatatttggatactctccggatacgtatcgggcaggtatcggtgca 53192549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 52684489 - 52684441
Alignment:
Q  22 gcttccaaatctggttcatccaaagacaactctactaactcaattacaa 70  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52684489 gcttccaaatttggttcatccaaagacaactctactaactcaattacaa 52684441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 40497481 - 40497396
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  40497481 gtatcggaaagtatcggataattattttttttaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 40497396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 45532979 - 45533032
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  45532979 aaaaataaaatttaatatttggatactcttcggatacgtatcggg-aagtatcgg 45533032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 10224590 - 10224638
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10224590 cttccaaatctggttcatccaaagacaactctgctaactcaattccaac 10224638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 28968663 - 28968576
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||| ||||||| ||||||||        |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  28968663 acgtatcgggaagtatcggataattattttttttaaaaataaaatttaatcttcggatactcttctgatacgtatcggg-aagtatcgg 28968576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 37996778 - 37996854
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| |||||||||||||||    
T  37996778 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcggg 37996854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 47642159 - 47642068
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||| ||||||||||||||||         ||||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||    
T  47642159 acgtatcgggaagtatcagataattatttttttataaaataaaatttaatcttcggatactcttctgatacgtattggg-aagtatcggtgca 47642068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 52505832 - 52505876
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  52505832 aaaaataaaatttaatatttggatactcttcggatacgtatcggg 52505876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 25936502 - 25936565
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  25936502 caagatacaaatcagcttctaaatctggttcatccaaagacaactctgctaactcaattccaac 25936565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 48123503 - 48123460
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaatt 66  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  48123503 cttccaaatctggttcatccaaagacaactctactaactaaatt 48123460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 1679697 - 1679750
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  1679697 aaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 1679750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 10225161 - 10225218
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||||| |||||||||||| || |||||||||||||    
T  10225161 aaaaataaaatttaatatttggatactctccggatacgtatc-ggaaagtatcggtgca 10225218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 45347416 - 45347374
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  45347416 aaaaataaaatttaatcttcggatactcttcggatacgtatcg 45347374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 1679120 - 1679168
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  1679120 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 1679168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 7899718 - 7899762
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||| |||||||||||||| |||||||||||||    
T  7899718 aaaaataaaatttaatcttcggatactcttctgatacgtatcggg 7899762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 13748413 - 13748489
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||| ||||||||||||||||        |||||||||||||||| |||||||||||||| ||||||||||||    
T  13748413 acgtatcgggaagtatcagataattattttaaa-aaaaataaaatttaatcttcggatactcttctgatacgtatcgg 13748489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 42464909 - 42464959
Alignment:
Q  200 aataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  42464909 aataaaaattaatatttggatactcttcggatacgtatcggg-aagtatcgg 42464959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 45532486 - 45532549
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  ||||||||||||  |||||||||||||||||||| ||||||||||| ||||    
T  45532486 caagatacaaatcagcttccaaatcaagttcatccaaagacaactctgctaactcaattccaac 45532549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 7327831 - 7327778
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||| |||||||||    
T  7327831 aaaaataaaatttaatatttggatactatccggatacgtatcggg-aagtatcgg 7327778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 19349599 - 19349657
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||| |||||||||| |||| ||||||||| ||||||||||||||| ||||| |||||    
T  19349599 aaaaaaaaaatttaatcttcgtatactcttctgatacgtatcgggcaggtatcagtgca 19349657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 19421569 - 19421491
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||| ||||||| ||||||||        |||||||||||||||| |||||||||||| | |||||||||||||    
T  19421569 acgtatcgggaagtatcggataattactttttaaaaaaataaaatttaatcttcggatactctcctgatacgtatcggg 19421491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 35389869 - 35389816
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||    
T  35389869 aaaaataaaatttaatatttggatactctcccgatacgtatcggg-aagtatcgg 35389816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 42229793 - 42229740
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||||| |||||||||||||| |||||||||| || |||||||||    
T  42229793 aaaaataaaatttaattttcggatactcttctgatacgtatcagg-aagtatcgg 42229740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 255
Target Start/End: Original strand, 21006424 - 21006552
Alignment:
Q  129 cggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataattannnnnnnnaa--aaataaaatttaatattcggatactctt 226  Q
    ||||||||||||||||||| ||||||||||  | |||||| | |||||||| ||||||||            ||||||| |||||||||||||||||||     
T  21006424 cggaacaaatagaagtatcattcgcgtatccggaacgtatagaaaagtatcggataattattttttttttttaaataaattttaatattcggatactctc 21006523  T
Q  227 cggatacgtatcgggcaagtatcggtgca 255  Q
    || |||||| ||||||| |||||| ||||    
T  21006524 cgaatacgtgtcgggcaggtatcgatgca 21006552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 53165509 - 53165570
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgcatgat 259  Q
    |||||||||| |||| ||||||| |||||| ||||||||||||| | ||||| |||||||||    
T  53165509 aaaataaaatataatcttcggatgctcttctgatacgtatcgggaaggtatcagtgcatgat 53165570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 55268982 - 55269059
Alignment:
Q  164 cgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||| ||||||| ||||||||        |||||||||||||||| |||||||||||| | |||||||||||||    
T  55268982 cgtatcgggaagtatcggataattattttttaaaaaaataaaatttaatcttcggatactctcctgatacgtatcggg 55269059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 3983816 - 3983772
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||| |||||||||||| | |||||||||||||    
T  3983816 aaaaataaaatttaatcttcggatactctcctgatacgtatcggg 3983772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 19879068 - 19879160
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||| ||||||| ||||||||        |||||||||||| ||| |||||||||||| |  |||| ||||||||| |||||||||||    
T  19879068 acgtatcgggaagtatcggataattatttttttaaaaaataaaattgaatcttcggatactctccttatacatatcgggcaggtatcggtgca 19879160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 28705416 - 28705368
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||  ||||||||||||||||||||| ||||||||||| ||||    
T  28705416 cttccaaatacggttcatccaaagacaactctgctaactcaattccaac 28705368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 28882644 - 28882720
Alignment:
Q  164 cgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    |||||||||||||||| || |||||        ||||||||||||||||||| ||||||||| | ||||||||||||    
T  28882644 cgtatcggaaagtatcggaaaattattttcttaaaaaataaaatttaatatttggatactctcccgatacgtatcgg 28882720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 48122944 - 48122900
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||    
T  48122944 aaaaataaaatttaatatttggatactctctggatacgtatcggg 48122900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 5271588 - 5271533
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggt 252  Q
    |||||||||||||||| | |||||||||| | ||||||||||||| | ||||||||    
T  5271588 aaaaataaaatttaatctccggatactctcctgatacgtatcgggaaggtatcggt 5271533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 33240069 - 33240016
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||| ||||||| ||||||||| | ||||||||||||| |||||||||    
T  33240069 aaaaataaaatataatatttggatactctcccgatacgtatcggg-aagtatcgg 33240016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 52121299 - 52121257
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    ||||||||||||||||||| ||||||||| | |||||||||||    
T  52121299 aaaaataaaatttaatatttggatactctcccgatacgtatcg 52121257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 30787562 - 30787603
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    ||||||||||||||| |||||||||||| | |||||||||||    
T  30787562 aaaataaaatttaatcttcggatactctcctgatacgtatcg 30787603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 41742071 - 41742115
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||| |||||||||||| | |||| ||||||||    
T  41742071 aaaaataaaatttaatcttcggatactctccagatatgtatcggg 41742115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 45159227 - 45159353
Alignment:
Q  116 tatctgtgcatagcggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatatt 215  Q
    |||| |||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||        |||||||||||||||||||    
T  45159227 tatccgtgcgtatcggaacaaatagaagtatccttcgcgtatccaggacgtatcggaaagtatcggataagta-tttttttaaaaataaaatttaatatt 45159325  T
Q  216 cggatactcttcggatacgtatcgggca 243  Q
    || ||||||||| |||||||||||||||    
T  45159326 cgaatactcttcagatacgtatcgggca 45159353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 20536884 - 20536826
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  20536884 aaaaataaaatttaatatttggatactcttccgatacgtatcgggcaagtatcggtgca 20536826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 33324972 - 33324884
Alignment:
Q  162 gacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  33324972 gacgtatcggaaagtatcagataattattttttttaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 33324884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 45159117 - 45159180
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaa 70  Q
    |||||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  45159117 acaagatacaaaccaacttccaaatctggttcatccaaagacaattctactaactcaattacaa 45159180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 38602286 - 38602374
Alignment:
Q  162 gacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||| |||||||||||||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  38602286 gacgtattggaaagtatcagataattattttttttaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 38602374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 4169946 - 4170009
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  4169946 caagatacaaatcagcttccaaatctggttcatccaaagacaactctgctaactcaattccaac 4170009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 7876865 - 7876780
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  7876865 gtatcggaaagtatcggataattatttttttaaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 7876780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 6497096 - 6497159
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  6497096 caagatacaaatcagcttccaaatccggttcatccaaagacaactctgctaactcaattccaac 6497159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 16561919 - 16561866
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  16561919 aaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 16561866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 22484386 - 22484333
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  22484386 aaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 22484333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 40308896 - 40308949
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  40308896 aaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 40308949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 14824256 - 14824195
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgcatgat 259  Q
    ||||||||||||||| |||||||||||||| |||||||||| | ||  ||||||||||||||    
T  14824256 aaaataaaatttaatcttcggatactcttctgatacgtatcagacagatatcggtgcatgat 14824195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 3563993 - 3563902
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||| ||||||||||||||||        | |||||||||||||| |||||||||||| | ||||||||||||| ||||||| |||||    
T  3563993 acgtatcgggaagtatcagataattattttttaaagaaataaaatttaatcttcggatactctcctgatacgtatcggg-aagtatcagtgca 3563902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 4170501 - 4170545
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    
T  4170501 aaaaataaaatttaatatttggatactctccggatacgtatcggg 4170545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 6124844 - 6124796
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  6124844 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 6124796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 6497648 - 6497692
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    
T  6497648 aaaaataaaatttaatatttggatactctccggatacgtatcggg 6497692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 22484946 - 22484898
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  22484946 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 22484898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 40308277 - 40308325
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  40308277 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 40308325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 1776435 - 1776478
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  1776435 aaaaataaaatttaatcttcggatactcttctgatacgtatcgg 1776478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 8482916 - 8482959
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  8482916 aaaaataaaatttaatcttcggatactcttctgatacgtatcgg 8482959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 4561907 - 4561854
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||||| |||||||||||||| |||| |||||||| |||||||||    
T  4561907 aaaaataaaatttaatcttcggatactcttctgatatgtatcggg-aagtatcgg 4561854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 6124292 - 6124239
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| |||||||||||| || |||||||||    
T  6124292 aaaaataaaatttaatatttggatactctccggatacgtatcagg-aagtatcgg 6124239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 2319394 - 2319353
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatc 238  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  2319394 aaaaataaaatttaatcttcggatactcttctgatacgtatc 2319353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 7807373 - 7807425
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcg 250  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||| ||||||||    
T  7807373 aaaaataaaatttaatatttggatactttccggatacgtatcggg-aagtatcg 7807425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 40536350 - 40536293
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    |||||||||||||||  || |||||||||| ||||||||||||| | |||||||||||    
T  40536350 aaaataaaatttaatgatctgatactcttccgatacgtatcgggtaggtatcggtgca 40536293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 35342436 - 35342392
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||| |||||||||||||  |||||||||||||    
T  35342436 aaaaataaaatttaatcttcggatactcttttgatacgtatcggg 35342392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 44156716 - 44156672
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||| |||||||||||| | |||||||||||||    
T  44156716 aaaaataaaatttaatcttcggatactctcctgatacgtatcggg 44156672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 18301091 - 18301049
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    ||||||||||||||||||| ||||||||| | |||||||||||    
T  18301091 aaaaataaaatttaatatttggatactctcccgatacgtatcg 18301049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 22571054 - 22571003
Alignment:
Q  199 aaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||| ||||||||  |||||||||||| || |||||||||    
T  22571054 aaataaaatttaatatttggatactccccggatacgtatcagg-aagtatcgg 22571003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 31236185 - 31236229
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||| ||||||||||| |||||||||||| | |||||||||||||    
T  31236185 aaaattaaaatttaatcttcggatactctcctgatacgtatcggg 31236229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 34146299 - 34146255
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||| || ||||||||| | |||||||||||||    
T  34146299 aaaaataaaatttaatctttggatactctcctgatacgtatcggg 34146255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 40497384 - 40497428
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||| || ||||||||| | |||||||||||||    
T  40497384 aaaaataaaatttaatctttggatactctcctgatacgtatcggg 40497428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 25969582 - 25969460
Alignment:
Q  129 cggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataatta-nnnnnnnnaaaaataaaatttaatattcggatactcttc 227  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||         ||||||||||||||||||| ||||||||| |    
T  25969582 cggaacaaatagaagtatccttcgcgtatccgggacgtatcggaaagtatcggataattattttataaaaaaaataaaatttaatatttggatactctcc 25969483  T
Q  228 ggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||| |||||||||    
T  25969482 ggatacgtatcggg-aagtatcgg 25969460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 129 - 251
Target Start/End: Original strand, 9250351 - 9250474
Alignment:
Q  129 cggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataatta--nnnnnnnnaaaaataaaatttaatattcggatactctt 226  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||          ||||||||||||||||||| |||||||||     
T  9250351 cggaacaaatagaagtatccttcgcgtatccgggacgtatcggaaagtatcggataattattttaataaaaaaaataaaatttaatatttggatactctc 9250450  T
Q  227 cggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| |||||||||    
T  9250451 cggatacgtatcggg-aagtatcgg 9250474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 36202754 - 36202845
Alignment:
Q  164 cgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    |||||||||||||||||||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||    
T  36202754 cgtatcggaaagtatcagataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcgggcaggcatcggtgca 36202845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 42897140 - 42897050
Alignment:
Q  164 cgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    |||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  42897140 cgtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcggtgca 42897050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 9283802 - 9283856
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaact 61  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  9283802 acaagatacaaaccagcttccaaatctggttcatccaaagacaactctactaact 9283856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 25969681 - 25969627
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaact 61  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  25969681 acaagatacaaaccagcttccaaatctggttcatccaaagacaactctactaact 25969627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 38263150 - 38263072
Alignment:
Q  162 gacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||    
T  38263150 gacgtatcggaaagtatcagataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcgg 38263072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 48163561 - 48163471
Alignment:
Q  160 aggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    |||| ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  48163561 aggatgtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 48163471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 27354069 - 27353984
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  27354069 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 27353984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 27555336 - 27555421
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  27555336 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 27555421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 39520905 - 39520848
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  39520905 aaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcggtgca 39520848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 47720029 - 47720083
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaact 61  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||    
T  47720029 acaagatacaaaccagcttccaaatctggctcatccaaagacaactctactaact 47720083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 11829841 - 11829765
Alignment:
Q  161 ggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtat 237  Q
    ||||||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| |||||||||||    
T  11829841 ggacgtatcggaaagtatcggataattattttttttaaaaataaaatttaatatttggatactctccggatacgtat 11829765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 47720171 - 47720215
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  47720171 aaaaataaaatttaatattcggatactctccggatacgtatcggg 47720215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 11058621 - 11058558
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  11058621 caagatacaaatcagcttccaaatccggttcatccaaagacaactctgctaactcaattccaac 11058558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 11830382 - 11830319
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  ||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  11830382 caagatacaaatcagctttcaaatctggttcatccaaagacaactctgctaactcaattccaac 11830319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 16850934 - 16850859
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||||| ||||||||||||    
T  16850934 gtatcggaaagtatcggataattatttttttaaaaaataaaatttaatatttggatactcttcagatacgtatcgg 16850859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 36661158 - 36661095
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  36661158 caagatacaaatcagcttccaaatccggttcatccaaagacaactcttctaactcaattccaac 36661095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 9250251 - 9250304
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaact 61  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  9250251 acaagatacaaaccagcttccaaatctggttcatccaaag-caactctactaact 9250304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 47238616 - 47238674
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||||| | ||||| ||||||||| |||||||||||    
T  47238616 aaaaataaaatttaatatttggatactctccagatacatatcgggcaggtatcggtgca 47238674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 40096336 - 40096288
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  40096336 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 40096288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 27397541 - 27397604
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  ||||| |||||| ||||||||||||||||||||| ||||||||||| ||||    
T  27397541 caagatacaaattagctttcaaatccggttcatccaaagacaactctgctaactcaattccaac 27397604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 34238306 - 34238231
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| || |||||||||||    
T  34238306 gtatcggaaagtatcggataattattttttttaaaaataaaatttaatatttggatactctccgaatacgtatcgg 34238231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 40095798 - 40095723
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||| ||||||||        |||||||||||||||||||  |||||||| ||||||||||||||    
T  40095798 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttagatactctccggatacgtatcgg 40095723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 34122616 - 34122669
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||    
T  34122616 aaaaataaaatttaatatttggatactctccagatacgtatcggg-aagtatcgg 34122669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 47720094 - 47720156
Alignment:
Q  110 cacatttatctgtgcatagcggaacaaatagaagtatccttcgcgtatctaggacgtatcgga 172  Q
    |||| ||||| |||| || | ||||||||||||||||||||||||||||  ||||||||||||    
T  47720094 cacacttatccgtgcgtatcagaacaaatagaagtatccttcgcgtatccgggacgtatcgga 47720156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 16564378 - 16564422
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||    
T  16564378 aaaaataaaatttaatatttggatactctcccgatacgtatcggg 16564422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 16601284 - 16601240
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||    
T  16601284 aaaaataaaatttaatatttggatactctcccgatacgtatcggg 16601240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 26973203 - 26973127
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    ||||||||| ||||||| ||||||||        ||||| |||||||||| |||||||||||||| |||||||||||    
T  26973203 acgtatcgggaagtatcggataattatttaaaaaaaaaaaaaaatttaatcttcggatactcttctgatacgtatcg 26973127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 1043070 - 1043113
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||    
T  1043070 aaaaataaaatttaatatttggatactctcccgatacgtatcgg 1043113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 26773674 - 26773753
Alignment:
Q  160 aggacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    |||| |||| ||||||||||||| |||||        ||||||||||||||||||| ||||||||| | |||||||||||    
T  26773674 aggatgtattggaaagtatcagaaaattattttcttaaaaaataaaatttaatatttggatactctcccgatacgtatcg 26773753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 35159980 - 35159937
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||| |||||||||||| | |||||||||||||    
T  35159980 aaaataaaatttaatcttcggatactctcctgatacgtatcggg 35159937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 554889 - 554947
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    |||||||||||||||| |||| ||||||| | |||||||||| || | |||||||||||    
T  554889 aaaaataaaatttaatcttcgaatactctcctgatacgtatcaggaaggtatcggtgca 554947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 1363011 - 1363053
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    ||||||||||||| ||||||||||||||| | |||||||||||    
T  1363011 aaaaataaaatttcatattcggatactctcctgatacgtatcg 1363053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 36660594 - 36660536
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| | |||||||  ||||||||||||| || |||| ||||||    
T  36660594 aaaaataaaatttaatatttgaatactctctggatacgtatcggacaggtattggtgca 36660536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 7416729 - 7416684
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatcgggca 243  Q
    ||||||||||||||| |||||||||||| | |||||||||| ||||    
T  7416729 aaaataaaatttaatcttcggatactctcctgatacgtatcaggca 7416684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 26845866 - 26845939
Alignment:
Q  168 tcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||| ||||||||        ||||||||||||||||||| ||||||||| |  ||||||||||||    
T  26845866 tcggaaagtatcggataattattttttttaaaaataaaatttaatatttggatactctccaaatacgtatcggg 26845939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 27688010 - 27688051
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    ||||||||||||||| ||||||||||||||  ||||||||||    
T  27688010 aaaataaaatttaatcttcggatactcttcttatacgtatcg 27688051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 21409507 - 21409463
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||| || ||||||||| | |||||||||||||    
T  21409507 aaaaataaaatttaatctttggatactctcctgatacgtatcggg 21409463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 23311838 - 23311794
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||| |||||||||||| | ||||| |||||||    
T  23311838 aaaaataaaatttaatcttcggatactctcctgatacatatcggg 23311794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 27398046 - 27398082
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatac 233  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  27398046 aaaaataaaatttaatatttggatactctccggatac 27398082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 40041494 - 40041454
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatc 238  Q
    ||||||||||||||| |||||||||||| | ||||||||||    
T  40041494 aaaataaaatttaatcttcggatactctcctgatacgtatc 40041454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 44960134 - 44960178
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    |||||||||||||||| || ||||||||||| ||||| |||||||    
T  44960134 aaaaataaaatttaatctttggatactcttctgatacatatcggg 44960178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 129 - 251
Target Start/End: Original strand, 30777452 - 30777574
Alignment:
Q  129 cggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataatta-nnnnnnnnaaaaataaaatttaatattcggatactcttc 227  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||         ||||||||||||||||||| ||||||||| |    
T  30777452 cggaacaaatagaagtatccttcgcgtatccgggacgtatcggaaagtatcggataattattttataaaaaaaataaaatttaatatttggatactctcc 30777551  T
Q  228 ggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||| |||||||||    
T  30777552 ggatacgtatcggg-aagtatcgg 30777574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 255
Target Start/End: Original strand, 6243085 - 6243225
Alignment:
Q  116 tatctgtgcatagcggaacaaatagaagtatccttcgcgtatctaggacgtatcggaaagtatcagataattannnnnnnn--aaaaataaaatttaata 213  Q
    |||| |||| || ||||||||||| ||||||||||||||||||  |||||||||| ||| |||| ||||||||          |||||||||||||||||    
T  6243085 tatccgtgcgtatcggaacaaatataagtatccttcgcgtatccgggacgtatcgaaaaatatcggataattattttttttttaaaaataaaatttaata 6243184  T
Q  214 ttcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    |||||||||||| |||||||||||| || |||||||||||||    
T  6243185 ttcggatactctccggatacgtatc-ggaaagtatcggtgca 6243225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 32707795 - 32707883
Alignment:
Q  162 gacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  32707795 gacgtatcggaaagtatcagataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 32707883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 6242984 - 6243047
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaa 70  Q
    |||||||| | || |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6242984 acaagatacacaccagcttcaaaatctggttcatccaaagacaactctactaactcaattacaa 6243047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 30777351 - 30777405
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaact 61  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  30777351 acaagatacaaaccagcttccaaatctggttcatccaaagacaactctactaact 30777405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 1639781 - 1639834
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  1639781 aaaaataaaatttaatatttggatactcttcggatacgtatcggg-aagtatcgg 1639834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 7977360 - 7977302
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    |||||||||||||||||||  |||||||| || ||||||||||||||||||||||||||    
T  7977360 aaaaataaaatttaatatttagatactctccgaatacgtatcgggcaagtatcggtgca 7977302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 11906337 - 11906284
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  11906337 aaaaataaaatttaatattcggatactctccggatacgtatcggg-aagtatcgg 11906284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 32625027 - 32624943
Alignment:
Q  166 tatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||| ||||||||        ||||||||||||||||||| |||||||||||| |||||||||||| |||||||||    
T  32625027 tatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactcttcgaatacgtatcggg-aagtatcgg 32624943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 26794432 - 26794480
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  26794432 cttccaaatctggttcatccaaagacaactctgctaactcaattccaac 26794480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 12852227 - 12852170
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||||| |||||||||||| || |||||||||||||    
T  12852227 aaaaataaaatttaatatttggatactctccggatacgtatcagg-aagtatcggtgca 12852170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 26716426 - 26716348
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||| ||||||| ||||||||        |||||||||||||||| |||||||||||||| |||||||||||||    
T  26716426 acgtatcgggaagtatcggataattattttttaaaaaaataaaatttaatcttcggatactcttctgatacgtatcggg 26716348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 26795003 - 26795060
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||||| |||||||||||| || |||||||||||||    
T  26795003 aaaaataaaatttaatatttggatactctccggatacgtatc-ggaaagtatcggtgca 26795060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 26986166 - 26986088
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||| ||||||| ||||||||        |||||||||||||||| |||||||||||||| |||||||||||||    
T  26986166 acgtatcgggaagtatcggataattattttttaaaaaaataaaatttaatcttcggatactcttctgatacgtatcggg 26986088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 39690730 - 39690815
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| |||||||||||| || |||||||||    
T  39690730 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcagg-aagtatcgg 39690815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 9792975 - 9792927
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  9792975 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 9792927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 1639213 - 1639276
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  ||||| |||||| ||||||||||||||||||||| ||||||||||| ||||    
T  1639213 caagatacaaatcagcttgcaaatccggttcatccaaagacaactctgctaactcaattccaac 1639276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 1795511 - 1795468
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  1795511 aaaaataaaatttaatcttcggatactcttctgatacgtatcgg 1795468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 9792438 - 9792385
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| |||||||||  |||||||||||||| |||||||||    
T  9792438 aaaaataaaatttaatatttggatactctctggatacgtatcggg-aagtatcgg 9792385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 11907467 - 11907405
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaa 70  Q
    ||||||| |||  ||||| ||||| ||||||||||||||| ||||||| ||||||||||||||    
T  11907467 caagatacaaatcagctttcaaatgtggttcatccaaagaaaactctagtaactcaattacaa 11907405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 17138219 - 17138297
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||| ||||||||||||||||        |||||||||||||||| |||||||| ||| | |||||||||||||    
T  17138219 acgtatcgggaagtatcagataattactttttaaaaaaataaaatttaatcttcggatattctcctgatacgtatcggg 17138297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 32728708 - 32728761
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||||| |||||||||    
T  32728708 aaaaataaaatctaatatttggatactctccggatacgtatcggg-aagtatcgg 32728761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 33829872 - 33829828
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||    
T  33829872 aaaaaaaaaatttaatatttggatactctccggatacgtatcggg 33829828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 39690170 - 39690218
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| | ||||||||||||||||||| ||||||||||| ||||    
T  39690170 cttccaaatccgattcatccaaagacaactctgctaactcaattccaac 39690218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 3934787 - 3934830
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    |||||||||||||||| |||||||||||| | ||||||||||||    
T  3934787 aaaaataaaatttaatcttcggatactctcctgatacgtatcgg 3934830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 14836500 - 14836457
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||    
T  14836500 aaaaaaaaaaattaatattcggatactcttctgatacgtatcgg 14836457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 21251584 - 21251541
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    |||||| |||||||||||||||||||||| | ||||||||||||    
T  21251584 aaaaattaaatttaatattcggatactctcctgatacgtatcgg 21251541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 30284607 - 30284650
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||| |||||||||||| | |||||||||||||    
T  30284607 aaaataaaatttaatcttcggatactctcctgatacgtatcggg 30284650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 26691769 - 26691691
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||| ||||||| ||||||||        |||||||||||||||| ||||||||||||   |||||||||||||    
T  26691769 acgtatcgggaagtatcggataattatttttaaaaaaaataaaatttaatcttcggatactctcttgatacgtatcggg 26691691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 26961501 - 26961423
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||| ||||||| ||||||||        |||||||||||||||| ||||||||||||   |||||||||||||    
T  26961501 acgtatcgggaagtatcggataattatttttaaaaaaaataaaatttaatcttcggatactctcttgatacgtatcggg 26961423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 41392679 - 41392764
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||         |||||||||||||||||| ||||||||  ||||||| ||||||| |||||||||    
T  41392679 gtatcggaaagtatcagattattatttttttttaaaataaaatttaatatttggatactccccggatacatatcggg-aagtatcgg 41392764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 34032521 - 34032444
Alignment:
Q  164 cgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||| || ||||||||||||||||        |||||||||| ||||| |||||||||||| | |||||||||||||    
T  34032521 cgtattgggaagtatcagataattatttttttaaaaaataaaaattaatcttcggatactctcctgatacgtatcggg 34032444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 12852789 - 12852741
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||||||  |||||||||||||||||| | ||||||||||| ||||    
T  12852789 cttccaaatccagttcatccaaagacaactatgctaactcaattccaac 12852741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 19102464 - 19102508
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||  ||| ||||||||| |||||||||||||    
T  19102464 aaaaataaaatttaattgtcgtatactcttctgatacgtatcggg 19102508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 27938278 - 27938242
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatac 233  Q
    |||||||||||||||| |||||||||||||| |||||    
T  27938278 aaaaataaaatttaatcttcggatactcttctgatac 27938242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 32707324 - 32707388
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||| |||  ||||||| |||| ||||||| ||||||||||| | ||||||||||| ||||    
T  32707324 acaagatacaaatcagcttcctaatccggttcattcaaagacaactatgctaactcaattccaac 32707388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 33830436 - 33830392
Alignment:
Q  27 caaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||| |||||||||||||||| |||| ||||||||||| ||||    
T  33830436 caaatccggttcatccaaagacagctctgctaactcaattccaac 33830392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 36367669 - 36367759
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  36367669 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcgggcaggtatcggtgca 36367759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 1043381 - 1043293
Alignment:
Q  162 gacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  1043381 gacgtatcggaaagtatcagataattattttttttaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 1043293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 1036613 - 1036535
Alignment:
Q  162 gacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||    
T  1036613 gacgtatcggaaagtatcagataattatttttttaaaaaataaaatttaatatttggatactctccggatacgtatcgg 1036535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 25257300 - 25257237
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  25257300 caagatacaaatcagcttccaaatccggttcatccaaagacaactcttctaactcaattccaac 25257237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 20409553 - 20409606
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  20409553 aaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 20409606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 28949208 - 28949293
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| |||||||||||| || |||||||||    
T  28949208 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcagg-aagtatcgg 28949293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 37104271 - 37104186
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| |||||||||||| || |||||||||    
T  37104271 gtatcggaaagtatcggataattatttttttaaaaaataaaatttaatatttggatactctccggatacgtatcagg-aagtatcgg 37104186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 8132302 - 8132250
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcg 250  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  8132302 aaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcg 8132250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 28659265 - 28659342
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||| ||||| ||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||    
T  28659265 acgtatcggaacgtatcggataattattttttaaaaaaataaaatttaatatttggatactctccggatacgtatcgg 28659342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 3427517 - 3427469
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  3427517 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 3427469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 6916303 - 6916351
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  6916303 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 6916351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 8132849 - 8132801
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  8132849 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 8132801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 38331116 - 38331068
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  38331116 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 38331068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 52895142 - 52895190
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  52895142 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 52895190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 2364796 - 2364753
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  2364796 aaaaataaaatttaatcttcggatactcttctgatacgtatcgg 2364753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 6916841 - 6916916
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||| ||||||||        |||||||||||||||||||  |||||||| ||||||||||||||    
T  6916841 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttagatactctccggatacgtatcgg 6916916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 30324387 - 30324344
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaatt 66  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  30324387 cttccaaatccggttcatccaaagacaactctgctaactcaatt 30324344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 38330578 - 38330503
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||| ||||||||        |||||||||||||||||||  |||||||| ||||||||||||||    
T  38330578 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttagatactctccggatacgtatcgg 38330503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 52895680 - 52895755
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||| ||||||||        |||||||||||||||||||  |||||||| ||||||||||||||    
T  52895680 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttagatactctccggatacgtatcgg 52895755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 3426967 - 3426914
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| |||||||||||| || |||||||||    
T  3426967 aaaaataaaatttaatatttggatactctccggatacgtatcagg-aagtatcgg 3426914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 13012991 - 13013044
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||    
T  13012991 aaaaataaaatttaatatttggatactctcccgatacgtatcggg-aagtatcgg 13013044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 25256735 - 25256682
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||| |||||||||    
T  25256735 aaaaataaaatttaatatttgaatactctccggatacgtatcggg-aagtatcgg 25256682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 30323834 - 30323781
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||    
T  30323834 aaaaataaaatttaatatttggatactctccagatacgtatcggg-aagtatcgg 30323781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 31653401 - 31653454
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||    
T  31653401 aaaaataaaatttaatatttggatactctcccgatacgtatcggg-aagtatcgg 31653454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 38948851 - 38948809
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcg 239  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  38948851 aaaaataaaatttaatatttggatattcttcggatacgtatcg 38948809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 38218502 - 38218461
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatc 238  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  38218502 aaaaataaaatttaatcttcggatactcttctgatacgtatc 38218461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 14167202 - 14167162
Alignment:
Q  198 aaaataaaatttaatattcggatactcttcggatacgtatc 238  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  14167202 aaaataaaatttaatcttcggatactcttctgatacgtatc 14167162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 28948648 - 28948696
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| | ||||||||||||||||||| ||||||||||| ||||    
T  28948648 cttccaaatccgattcatccaaagacaactctgctaactcaattccaac 28948696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 5984856 - 5984806
Alignment:
Q  21 agcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||||   |||||||||||||||||||| ||||||||||| ||||    
T  5984856 agcttccaaattcagttcatccaaagacaactctgctaactcaattccaac 5984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 37346847 - 37346900
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||  | ||||||||||||| |||||||||    
T  37346847 aaaaataaaatttaatatttggatactcccccgatacgtatcggg-aagtatcgg 37346900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 9092494 - 9092543
Alignment:
Q  199 aaataaaatttaatattcggatactcttcggatacgtatcgggcaagtat 248  Q
    |||||||||||||| |||||||||||| | |||||||||| |||| ||||    
T  9092494 aaataaaatttaatcttcggatactctcctgatacgtatcaggcaggtat 9092543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 34432382 - 34432423
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatc 238  Q
    |||||||||||||||| |||||||||||| | ||||||||||    
T  34432382 aaaaataaaatttaatcttcggatactctcctgatacgtatc 34432423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 5984346 - 5984306
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtat 237  Q
    ||||||||||||||||||| ||||||||| | |||||||||    
T  5984346 aaaaataaaatttaatatttggatactctccagatacgtat 5984306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 14334279 - 14334235
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||||| ||||||||| |  ||||||||||||    
T  14334279 aaaaataaaatttaatatttggatactctcccaatacgtatcggg 14334235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 32381058 - 32381098
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtat 237  Q
    |||||||||||||||| |||||||||||| | |||||||||    
T  32381058 aaaaataaaatttaatcttcggatactctcctgatacgtat 32381098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 8056 - 8144
Alignment:
Q  162 gacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  8056 gacgtatcggaaagtatcagataattattttttttaaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 8144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 7580 - 7644
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||| |||  ||||||| |||| ||||||| ||||||||||||| ||||||||||| ||||    
T  7580 acaagatacaaatcagcttcctaatccggttcattcaaagacaactctgctaactcaattccaac 7644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 8357112 - 8357024
Alignment:
Q  162 gacgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  8357112 gacgtatcggaaagtatcggataattatttttttaaaaaataaaatttaatatttggatactcttcggatacgtatcggg-aagtatcgg 8357024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 32018279 - 32018218
Alignment:
Q  9 aagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaa 70  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32018279 aagatacaaaccagcttccaaatttggttcatccaaagacaactctactaactcaattacaa 32018218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 7255037 - 7254977
Alignment:
Q  199 aaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgcatgat 259  Q
    |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  7255037 aaataaaatttaatcttcggatactcttctgatacgtatcgggcatgtatcggtgcatgat 7254977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 3212746 - 3212692
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaact 61  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  3212746 acaagatacaaaccagcttccaaatctggttcatccaaagacaactctactaact 3212692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 8357574 - 8357511
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  8357574 caagatacaaataagcttccaaatcaggttcatccaaagacaactctgctaactcaattccaac 8357511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 22989051 - 22989114
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  22989051 caagatacaaatcagcttccaaatccggttcatccaaagacaactctgctaactcaattccaac 22989114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 23799345 - 23799282
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  |||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  23799345 caagatacaaatcagcttccaaatccggttcatccaaagacaactctgctaactcaattccaac 23799282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 3212596 - 3212543
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  3212596 aaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcgg 3212543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 31195836 - 31195921
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| ||||||||        ||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||    
T  31195836 gtatcggaaagtatcggataattatttttttaaaaaataaaatttaatatttggatactctccagatacgtatcggg-aagtatcgg 31195921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 19128306 - 19128229
Alignment:
Q  163 acgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||| ||||||| ||||||||        |||||||||||||||| |||||||||||||| ||||||||||||    
T  19128306 acgtatcgggaagtatcggataattatttttaaaaaaaataaaatttaatcttcggatactcttctgatacgtatcgg 19128229  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 1036255 - 1036303
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  1036255 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 1036303  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 7188219 - 7188267
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  7188219 cttccaaatccggttcatccaaagacaactctgctaactcaattccaac 7188267  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 10894584 - 10894644
Alignment:
Q  199 aaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgcatgat 259  Q
    |||||||||||||| || ||||||||| | |||||||||| |||| |||||||||||||||    
T  10894584 aaataaaatttaatctttggatactctcctgatacgtatcaggcaggtatcggtgcatgat 10894644  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 1036793 - 1036868
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||||| ||||||||        |||||||||||||||||||  |||||||| ||||||||||||||    
T  1036793 gtatcggaaagtatcggataattattttttaaaaaaataaaatttaatatttagatactctccggatacgtatcgg 1036868  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 7188778 - 7188819
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatc 238  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  7188778 aaaaataaaatttaatatttggatactctccggatacgtatc 7188819  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 32130658 - 32130702
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||    
T  32130658 aaaaataaaatttaatatttggatactctcctgatacgtatcggg 32130702  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 21113579 - 21113632
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcg 250  Q
    ||||||||||||||||  ||||||||||||  |||||| ||||| |||||||||    
T  21113579 aaaaataaaatttaatcatcggatactcttttgatacgcatcggacaagtatcg 21113632  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 32018096 - 32018056
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtat 237  Q
    ||||||||||||||||||||  ||||||| |||||||||||    
T  32018096 aaaaataaaatttaatattcatatactctacggatacgtat 32018056  T

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Target: scaffold0177 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 25540 - 25597
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  25540 aaaaataaaatttaatatttggatactctccggatacgtatcggg-aagtatcggtgca 25597  T

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Target: scaffold0177; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 25042 - 25106
Alignment:
Q  7 acaagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||| |||  ||||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  25042 acaagatacaaatcagcttcctaatctggttcatccaaagacaactctgctaactcaattccaac 25106  T

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Target: scaffold0037 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 27790 - 27848
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| || |||||||||||    
T  27790 aaaaataaaatttaatatttggatactctgcggatacgtatcggacaggtatcggtgca 27848  T

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Target: scaffold0037; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 27229 - 27273
Alignment:
Q  27 caaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  27229 caaatctggttcatccaaagacaactctgctaactcaattccaac 27273  T

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Target: scaffold0250 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 5664 - 5578
Alignment:
Q  164 cgtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    |||||||||||||||| || |||||        ||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||    
T  5664 cgtatcggaaagtatcggaaaattattttcttaaaaaataaaatttaatatttggatactctcccgatacgtatcggg-aagtatcgg 5578  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 44045 - 44088
Alignment:
Q  23 cttccaaatctggttcatccaaagacaactctactaactcaatt 66  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  44045 cttccaaatccggttcatccaaagacaactctgctaactcaatt 44088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 44616 - 44653
Alignment:
Q  203 aaaatttaatattcggatactcttcggatacgtatcgg 240  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  44616 aaaatttaatatttggatactctccggatacgtatcgg 44653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 42075 - 42132
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcggtgca 255  Q
    ||||||||||||||||||| |||||||||   ||||||||||||| |||||||||||||    
T  42075 aaaaataaaatttaatatttggatactctctagatacgtatcggg-aagtatcggtgca 42132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 41508 - 41571
Alignment:
Q  8 caagatataaacgagcttccaaatctggttcatccaaagacaactctactaactcaattacaac 71  Q
    ||||||| |||  ||||| |||||  ||||||||||||||||||||| ||||||||||| ||||    
T  41508 caagatacaaatcagcttgcaaattcggttcatccaaagacaactctgctaactcaattccaac 41571  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 30411 - 30496
Alignment:
Q  165 gtatcggaaagtatcagataattannnnnnnnaaaaataaaatttaatattcggatactcttcggatacgtatcgggcaagtatcgg 251  Q
    ||||||||||||||| ||||||||         |||||||||||||||||| ||||||||| |||||||||||| || |||||||||    
T  30411 gtatcggaaagtatcggataattatttttttttaaaataaaatttaatatttggatactctccggatacgtatcagg-aagtatcgg 30496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 13975 - 13931
Alignment:
Q  197 aaaaataaaatttaatattcggatactcttcggatacgtatcggg 241  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||    
T  13975 aaaaaaaaaatttaatatttggatactctccggatacgtatcggg 13931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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