View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504-Insertion-15 (Length: 338)
Name: NF1504-Insertion-15
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 5829334 - 5829004
Alignment:
| Q |
8 |
attctctattctctttaattttctacattgttaacatggtatcaagagcatccttcttaagctactaagtttccgctattgagttcccaaaagtttaaga |
107 |
Q |
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| T |
5829334 |
attctctattctctttaattttctatattgttaacatggtatcaagagcatccttcttaaactactaagtttccgctattgagttcccaaaaatttgaga |
5829235 |
T |
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| Q |
108 |
atatgttttagtagttacggccttttggaattgaattttgaatgtaagagcgtgctggatttttaaaagattagtgtatttaagtttcatgaatggtatg |
207 |
Q |
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| T |
5829234 |
atatgttttagtagttacggcctcttggaattgaattttgaatgtaagagcgtgttggatttttaaaagattagtgtatttaagtttcatgaatggtatg |
5829135 |
T |
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| Q |
208 |
tttttgcggggatggattttgcaactttgttggatcttgttggtggcgtttgtgtaagaatcatatgaagggttttgcttcagggtgtttttccacgaat |
307 |
Q |
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| T |
5829134 |
tttttgcggggatggattttgcaactttgttggatcttgttggtggcgtttgtgtaagaatcatatgaagggttttgcttcagggtgttcttccacgaat |
5829035 |
T |
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| Q |
308 |
ttcatgagtttgcttatgggttgtaaattta |
338 |
Q |
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| T |
5829034 |
ttcatgagtttgcttatgggttgtaaattta |
5829004 |
T |
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