View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504-Insertion-16 (Length: 391)

Name: NF1504-Insertion-16
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504-Insertion-16
NF1504-Insertion-16
[»] chr2 (3 HSPs)
chr2 (79-346)||(41581534-41581801)
chr2 (119-346)||(13789067-13789293)
chr2 (76-108)||(41581814-41581846)
[»] chr6 (5 HSPs)
chr6 (118-346)||(12987729-12987956)
chr6 (124-346)||(2141867-2142088)
chr6 (219-342)||(1951296-1951419)
chr6 (279-342)||(1251937-1252000)
chr6 (79-108)||(12987686-12987715)
[»] chr5 (11 HSPs)
chr5 (118-346)||(37147353-37147580)
chr5 (118-346)||(7329710-7329937)
chr5 (118-346)||(34538169-34538396)
chr5 (279-342)||(35467825-35467888)
chr5 (238-333)||(18317702-18317798)
chr5 (279-342)||(5713066-5713129)
chr5 (279-342)||(10831195-10831258)
chr5 (279-342)||(10833283-10833346)
chr5 (279-342)||(23616326-23616389)
chr5 (279-342)||(23847723-23847786)
chr5 (79-107)||(37147597-37147625)
[»] chr8 (6 HSPs)
chr8 (78-346)||(7000077-7000345)
chr8 (79-346)||(42762264-42762531)
chr8 (119-346)||(111768-111994)
chr8 (76-346)||(34751959-34752228)
chr8 (118-346)||(27412020-27412241)
chr8 (279-342)||(29410985-29411048)
[»] chr1 (15 HSPs)
chr1 (79-346)||(8250809-8251077)
chr1 (190-342)||(13651187-13651339)
chr1 (194-342)||(13685910-13686058)
chr1 (190-342)||(19137106-19137258)
chr1 (188-342)||(24249055-24249208)
chr1 (190-342)||(13507393-13507545)
chr1 (190-342)||(13611466-13611618)
chr1 (190-342)||(13514581-13514733)
chr1 (204-269)||(51139442-51139507)
chr1 (238-342)||(14762635-14762741)
chr1 (279-342)||(9614569-9614632)
chr1 (279-342)||(23860811-23860874)
chr1 (279-342)||(36834645-36834708)
chr1 (279-342)||(38929100-38929163)
chr1 (279-339)||(26246156-26246216)
[»] chr7 (8 HSPs)
chr7 (76-346)||(28302983-28303253)
chr7 (81-346)||(6567970-6568236)
chr7 (118-346)||(34483289-34483516)
chr7 (79-346)||(28299417-28299684)
chr7 (218-342)||(44156783-44156907)
chr7 (279-342)||(29712866-29712929)
chr7 (279-342)||(45110903-45110966)
chr7 (279-342)||(47880066-47880129)
[»] chr3 (7 HSPs)
chr3 (118-346)||(44370051-44370278)
chr3 (118-343)||(36471999-36472223)
chr3 (238-338)||(4516997-4517098)
chr3 (279-342)||(41331921-41331984)
chr3 (279-342)||(51058106-51058169)
chr3 (279-340)||(34022222-34022283)
chr3 (279-342)||(43020711-43020774)
[»] chr4 (8 HSPs)
chr4 (79-346)||(123083-123350)
chr4 (190-340)||(45803220-45803370)
chr4 (238-338)||(18036428-18036529)
chr4 (279-343)||(50390831-50390895)
chr4 (283-342)||(1717238-1717297)
chr4 (279-342)||(46109071-46109134)
chr4 (279-342)||(52606113-52606176)
chr4 (279-342)||(52772353-52772416)
[»] scaffold0006 (1 HSPs)
scaffold0006 (190-342)||(140948-141100)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 79 - 346
Target Start/End: Original strand, 41581534 - 41581801
Alignment:
Q  79 atactccctccggtcttgaatgtaagaaacnnnnnnnnn-tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatg 177  Q
    ||||||||||||||||||||||||||||||          ||||||||||||| ||||||||||||||||||||       || ||||||| ||||||||    
T  41581534 atactccctccggtcttgaatgtaagaaacaaaaaaaaaatcacacatattaagaaagtggattgagtcattgtaaaaaa-taccatttttcctgttatg 41581632  T
Q  178 cccttgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgagg 277  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41581633 tccttgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgagg 41581732  T
Q  278 ttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41581733 ttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaacaa 41581801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 13789067 - 13789293
Alignment:
Q  119 cacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgcccttgtcttggaaacatgacttttgaactccaccaatgaa 218  Q
    |||||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13789067 cacacatattaagaaagtggattgagtcattgtaaaaaa-tatcattttttctgttatgcccttgtcttggaaacatgaattttgaactccaccaatgaa 13789165  T
Q  219 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgta 318  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13789166 aaatctttggaatgcgttaaacatgagaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttata 13789265  T
Q  319 tacttttgcttacatttgagaccaacaa 346  Q
    ||||||||||||||||||||||||||||    
T  13789266 tacttttgcttacatttgagaccaacaa 13789293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 41581846 - 41581814
Alignment:
Q  76 aacatactccctccggtcttgaatgtaagaaac 108  Q
    ||||||||||||||||||| |||||||||||||    
T  41581846 aacatactccctccggtctcgaatgtaagaaac 41581814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 118 - 346
Target Start/End: Original strand, 12987729 - 12987956
Alignment:
Q  118 tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgcccttgtcttggaaacatgacttttgaactccaccaatga 217  Q
    ||||||||||||| ||||||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  12987729 tcacacatattaagaaagtggattgagtcattgtaaaaaa-tatcatttttcctgttatgcccttgtcttggaaacatgacttttgaactccacgaatga 12987827  T
Q  218 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12987828 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 12987927  T
Q  318 atacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||||||||    
T  12987928 atacttttgcttacatttgagaccaacaa 12987956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 124 - 346
Target Start/End: Original strand, 2141867 - 2142088
Alignment:
Q  124 atattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgcccttgtcttggaaacatgacttttgaactccaccaatgaaaaatc 223  Q
    ||||||| ||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2141867 atattaagaaagtggattgagtcattgtaaaaaa-tatcatttttcctgttatgcccttgtcttggaaacatgacttttgaactccaccaatgaaaaatc 2141965  T
Q  224 tttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgtatactt 323  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2141966 tttggaatgcattaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgtatactt 2142065  T
Q  324 ttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||    
T  2142066 ttgcttacatttgagaccaacaa 2142088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 1951296 - 1951419
Alignment:
Q  219 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgta 318  Q
    ||||||||| || | |||||||||| ||||||||||||||||  ||||||  ||||||  ||||||||||||| |  ||||||||||||||||||| |||    
T  1951296 aaatctttgaaaagtgttaaacatgagaatgtgaaacaaattcaataaagctaatgagtgtaaaattggaataatgtcatttaataggatgactttagta 1951395  T
Q  319 tacttttgcttacatttgagacca 342  Q
    ||  ||||||||||||||||||||    
T  1951396 tatctttgcttacatttgagacca 1951419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 1251937 - 1252000
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  1251937 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 1252000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 108
Target Start/End: Original strand, 12987686 - 12987715
Alignment:
Q  79 atactccctccggtcttgaatgtaagaaac 108  Q
    ||||||||||||||||||||||||||||||    
T  12987686 atactccctccggtcttgaatgtaagaaac 12987715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 118 - 346
Target Start/End: Complemental strand, 37147580 - 37147353
Alignment:
Q  118 tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgcccttgtcttggaaacatgacttttgaactccaccaatga 217  Q
    ||||||||||||||||||||||||||||||||||       || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37147580 tcacacatattaaaaaagtggattgagtcattgtaaaaaa-taccatttttcctgttatgcccttgtcttggaaatatgacttttgaactccaccaatga 37147482  T
Q  218 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37147481 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 37147382  T
Q  318 atacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||||||||    
T  37147381 atacttttgcttacatttgagaccaacaa 37147353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 118 - 346
Target Start/End: Original strand, 7329710 - 7329937
Alignment:
Q  118 tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgcccttgtcttggaaacatgacttttgaactccaccaatga 217  Q
    ||||||||||||| ||||||||||||||||||||       || ||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  7329710 tcacacatattaagaaagtggattgagtcattgtaaaaaa-taccatttttcctgttatgcccttgtcttggaaacataacttttaaactccaccaatga 7329808  T
Q  218 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  7329809 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttgaaattggaatattaacatttaataggatgacttttgt 7329908  T
Q  318 atacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||||||||    
T  7329909 atacttttgcttacatttgagaccaacaa 7329937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 118 - 346
Target Start/End: Complemental strand, 34538396 - 34538169
Alignment:
Q  118 tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgcccttgtcttggaaacatgacttttgaactccaccaatga 217  Q
    ||||||||||||| ||||||||||||||||||||       |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34538396 tcacacatattaagaaagtggattgagtcattgtaaaaaa-tatcatttttcctgttatgcccttgttttggaaacatgacttttgaactccaccaatga 34538298  T
Q  218 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 317  Q
    |||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34538297 aaaatctttggaatgcgttaaacatgagaatgtgaaataaattagataaagtaaatgaggttaaaattggaatagtaacatttaatatgatgacttttgt 34538198  T
Q  318 atacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||||||||    
T  34538197 atacttttgcttacatttgagaccaacaa 34538169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 35467825 - 35467888
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| ||||||||||| ||  |||  ||||||||| ||||||||||||||||    
T  35467825 taaaattggaatagtagcatttaataggttgcttttactatactttttcttacatttgagacca 35467888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 18317702 - 18317798
Alignment:
Q  238 aacatgggaatgtgaaacaaattggata-aagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacat 333  Q
    |||| ||||||||||||||||||| ||| || | ||||||| |||| ||||||||||  ||||||||| ||||| ||   |||||||||| ||||||    
T  18317702 aacacgggaatgtgaaacaaattgaatataaattaatgagggtaaatttggaatagttgcatttaatatgatgatttagttatacttttgtttacat 18317798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 5713066 - 5713129
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  5713066 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 5713129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 10831258 - 10831195
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  10831258 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 10831195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 10833283 - 10833346
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  10833283 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 10833346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 23616326 - 23616389
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  23616326 taaaattggaatagtagcatttattaggttgtttttactatactttttcttacatttgagacca 23616389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 23847723 - 23847786
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  23847723 taaaattggaatagtagcatttattaggttgtttttactatactttttcttacatttgagacca 23847786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 37147625 - 37147597
Alignment:
Q  79 atactccctccggtcttgaatgtaagaaa 107  Q
    |||||||||||||||||||||||||||||    
T  37147625 atactccctccggtcttgaatgtaagaaa 37147597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 78 - 346
Target Start/End: Complemental strand, 7000345 - 7000077
Alignment:
Q  78 catactccctccggtcttgaatgtaagaaacnnnnnnnnn-tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttat 176  Q
    |||||||||||||||||||||||||||||||          ||||||||||||| ||||||||||||||||||||        | ||||||| |||||||    
T  7000345 catactccctccggtcttgaatgtaagaaacaaaaaaaaaatcacacatattaagaaagtggattgagtcattgtaaaaaag-accatttttcctgttat 7000247  T
Q  177 gcccttgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgag 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7000246 gcccttgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgag 7000147  T
Q  277 gttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7000146 gttaaaattggaatagtaacatttaatatgatgacttttgtatacttttgcttacatttgagaccaacaa 7000077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 79 - 346
Target Start/End: Complemental strand, 42762531 - 42762264
Alignment:
Q  79 atactccctccggtcttgaatgtaagaaacnnnnnnnnn-tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatg 177  Q
    |||||||||||| |||||||||||||||||          ||||||||||||||||||||||||||||||||||       |||||||||| ||||||||    
T  42762531 atactccctccgatcttgaatgtaagaaacaaaaaaaaaatcacacatattaaaaaagtggattgagtcattgtaaaaaa-tatcatttttcctgttatg 42762433  T
Q  178 cccttgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgagg 277  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42762432 cccttgtcttggaaacatgacttttgaacttcaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgagg 42762333  T
Q  278 ttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaacaa 346  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42762332 ttaaaattgtaatagtaacatttaataggatgacttttgtatacttttgcttacatttaagaccaacaa 42762264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 119 - 346
Target Start/End: Complemental strand, 111994 - 111768
Alignment:
Q  119 cacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgcccttgtcttggaaacatgacttttgaactccaccaatgaa 218  Q
    |||||||||||| |||||| |||||||||||||       || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  111994 cacacatattaagaaagtgaattgagtcattgtaaaaaa-taccatttttcctgttatgcccttgtcttggaaacatgacttttgaactccaccaatgaa 111896  T
Q  219 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgta 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  111895 aaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgatttttgta 111796  T
Q  319 tacttttgcttacatttgagaccaacaa 346  Q
    ||||||||||||||||||||||||||||    
T  111795 tacttttgcttacatttgagaccaacaa 111768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 76 - 346
Target Start/End: Complemental strand, 34752228 - 34751959
Alignment:
Q  76 aacatactccctccggtcttgaatgtaagaaacnnnnnnnnntcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgtta 175  Q
    |||||| ||||||||||||||||||||||||||         ||||| ||||||| ||||||||||||||||||||       || |||||||  |||||    
T  34752228 aacatattccctccggtcttgaatgtaagaaacaaaaaaaaatcacatatattaagaaagtggattgagtcattgtaaaaaa-taccatttttcttgtta 34752130  T
Q  176 tgcccttgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatga 275  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34752129 tgcccttgtcttggaaacatgacttttgaattccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatga 34752030  T
Q  276 ggttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaacaa 346  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34752029 agttaaaattggaatagtaacatttaatagaatgacttttgtatacttttgcttacatttgagaccaacaa 34751959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 118 - 346
Target Start/End: Complemental strand, 27412241 - 27412020
Alignment:
Q  118 tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgcccttgtcttggaaacatgacttttgaactccaccaatga 217  Q
    ||||||||||||||||||||||||||||||||||       || ||||||| |||||||||||||||| || ||      |||||||||||||||||| |    
T  27412241 tcacacatattaaaaaagtggattgagtcattgtaaaaaa-taccatttttactgttatgcccttgtcatgaaa------cttttgaactccaccaataa 27412149  T
Q  218 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27412148 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 27412049  T
Q  318 atacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||||||||    
T  27412048 atacttttgcttacatttgagaccaacaa 27412020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 29411048 - 29410985
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  29411048 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 29410985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 79 - 346
Target Start/End: Original strand, 8250809 - 8251077
Alignment:
Q  79 atactccctccggtcttgaatgtaagaaacnnnnnnnnn--tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttat 176  Q
    ||||||||||||||||||||||||||||||           ||||||||||||| ||||||||||||||||||||       |||||||||| |||||||    
T  8250809 atactccctccggtcttgaatgtaagaaacaaaaaaaacaatcacacatattaagaaagtggattgagtcattgtaaaaaa-tatcatttttcctgttat 8250907  T
Q  177 gcccttgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgag 276  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8250908 gcccttgtcttggaaacatgatttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgag 8251007  T
Q  277 gttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8251008 gttaaaattggaatagtaacatttaatatgatgacttttgtatacttttgcttacatttgagaccaacaa 8251077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 190 - 342
Target Start/End: Complemental strand, 13651339 - 13651187
Alignment:
Q  190 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaa 289  Q
    ||||||||||||||||||  ||||||||| ||||||| ||| | |||||||||||||||||||||||||||  ||||||  ||||||| | | |||||||    
T  13651339 aaacatgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatgggaatgtgaaacaaattaaataaagataatgagggtgagattggaa 13651240  T
Q  290 tagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    ||| |||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  13651239 tagcaacatttaataggacgacttttgtatatttttgcttatatttgagacca 13651187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 194 - 342
Target Start/End: Complemental strand, 13686058 - 13685910
Alignment:
Q  194 atgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagt 293  Q
    ||||||||||||||  ||||||||| ||||||| ||| | |||||||||||||||||||||||||||  ||||||| ||||||| | | |||||||||||    
T  13686058 atgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatgggaatgtgaaacaaattaaataaagttaatgagggtgagattggaatagt 13685959  T
Q  294 aacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||| | |||||||||||| ||||||||| |||||||||||    
T  13685958 aacatttaatagaacgacttttgtatatttttgcttatatttgagacca 13685910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 190 - 342
Target Start/End: Original strand, 19137106 - 19137258
Alignment:
Q  190 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaa 289  Q
    ||||||||||||||||||  ||||||||| ||||||| ||| | |||||||||||||||| ||||||||||  ||||||| ||||||| | |  ||||||    
T  19137106 aaacatgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatgggaatgggaaacaaattaaataaagttaatgagggtgaggttggaa 19137205  T
Q  290 tagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||||| |||||||||||| ||||||||| |||||| ||||    
T  19137206 tagtaacatttaataggacgacttttgtatatttttgcttatatttgaaacca 19137258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 188 - 342
Target Start/End: Complemental strand, 24249208 - 24249055
Alignment:
Q  188 ggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattgg 287  Q
    ||||||||||||| |||| ||| | | ||||||||||||  || | |||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||    
T  24249208 ggaaacatgacttatgaattccgcga-tgaaaaatcttttaaaagtgttaaatatgggaatgtgaaacaaattggataaagttaatgagggtaaaagtgg 24249110  T
Q  288 aatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||    
T  24249109 aatagtgacatttaatatgatgacttttatatacttttgtttacatttgaaacca 24249055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 342
Target Start/End: Complemental strand, 13507545 - 13507393
Alignment:
Q  190 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaa 289  Q
    ||||||||||||||||||  ||||||||| | ||||| ||| | |||||||||||||||||||||||||||  ||||||| ||||||| | | |||||||    
T  13507545 aaacatgacttttgaactaaaccaatgaatactctttagaaagtgttaaacatgggaatgtgaaacaaattaaataaagttaatgagggtgagattggaa 13507446  T
Q  290 tagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    ||| |||||||||||||| || |||| |||| ||||||||| |||||||||||    
T  13507445 tagcaacatttaataggacgatttttttatatttttgcttatatttgagacca 13507393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 342
Target Start/End: Complemental strand, 13611618 - 13611466
Alignment:
Q  190 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaa 289  Q
    ||||||||||||||||||  ||||||||| ||||||| ||| | ||||||||||||||| |||||||||||  ||  ||| ||||||| | | |||||||    
T  13611618 aaacatgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatgggaatttgaaacaaattaaatttagttaatgagggtgagattggaa 13611519  T
Q  290 tagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| | |||||||||||| ||||||||| |||||||||||    
T  13611518 tagtaacatttaatagaacgacttttgtatatttttgcttatatttgagacca 13611466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 190 - 342
Target Start/End: Complemental strand, 13514733 - 13514581
Alignment:
Q  190 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaa 289  Q
    ||||||||||||||||||  ||||||||| ||||||| ||| | ||||||||||| ||| |||||||||||  ||||||| ||||||| | | |||||||    
T  13514733 aaacatgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatggaaatatgaaacaaattaaataaagttaatgagggtgagattggaa 13514634  T
Q  290 tagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    ||| |||||||||||| | || |||| |||| ||||||||| |||||||||||    
T  13514633 tagaaacatttaatagaacgaattttatatatttttgcttatatttgagacca 13514581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 51139507 - 51139442
Alignment:
Q  204 aactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagt 269  Q
    |||| ||| |||||||||| ||||||| | ||||||||||||||||||||| |||||| |||||||    
T  51139507 aacttcacaaatgaaaaatatttggaaagtgttaaacatgggaatgtgaaataaattgaataaagt 51139442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 342
Target Start/End: Original strand, 14762635 - 14762741
Alignment:
Q  238 aacatgggaatgtgaaacaaattgg--ataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacattt 335  Q
    |||||| ||||||||||||||||||  ||||| | || |||| ||||||||||||||| |||| ||||||||||  ||   |||||||||| ||| || |    
T  14762635 aacatgagaatgtgaaacaaattggatataaaattaacgagggtaaaattggaatagtgacatgtaataggatggtttaattatacttttgtttatatct 14762734  T
Q  336 gagacca 342  Q
    |||||||    
T  14762735 gagacca 14762741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 9614632 - 9614569
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  9614632 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 9614569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 23860811 - 23860874
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  23860811 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 23860874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 36834708 - 36834645
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  36834708 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 36834645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 38929163 - 38929100
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  38929163 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 38929100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 26246216 - 26246156
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgaga 339  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| |||||||||||||    
T  26246216 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgaga 26246156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 76 - 346
Target Start/End: Complemental strand, 28303253 - 28302983
Alignment:
Q  76 aacatactccctccggtcttgaatgtaagaaacnnnnnnnnn-tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgtt 174  Q
    |||||||||||||||||||| ||||||||||||          ||||||||||||| |||||||||||||||||| |       |||||||||| |||||    
T  28303253 aacatactccctccggtcttaaatgtaagaaacaaaaaaaatatcacacatattaagaaagtggattgagtcattataaaaaa-tatcatttttcctgtt 28303155  T
Q  175 atgcccttgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatg 274  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28303154 atgcccttgtcttggaaacatgacttttgaattccaccaatgaaaaatctttggaatgcgttaaacatgagaatgtgaaacaaattggataaagtaaatg 28303055  T
Q  275 aggttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaacaa 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28303054 aggttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaacaa 28302983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 81 - 346
Target Start/End: Original strand, 6567970 - 6568236
Alignment:
Q  81 actccctccggtcttgaatgtaagaaacnnnnnnnnn--tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgc 178  Q
    ||||||||||||||||||||||||||||           ||||||||||||| ||||||||||||||||||||       || ||||||| |||||||||    
T  6567970 actccctccggtcttgaatgtaagaaacaaaaaaaaaaatcacacatattaagaaagtggattgagtcattgtaaaaaa-taccatttttcctgttatgc 6568068  T
Q  179 ccttgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggt 278  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6568069 ccttgtcttggaaatatgacttttgaactccactaatgaaaaatctttggaatgcgttaaacatgagaatgtgaaacaaattggataaagtaaatgaggt 6568168  T
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6568169 taaaattggaatagtaacatttaataggatgatttttgtatacttttgcttacatttgagaccaacaa 6568236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 118 - 346
Target Start/End: Original strand, 34483289 - 34483516
Alignment:
Q  118 tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgcccttgtcttggaaacatgacttttgaactccaccaatga 217  Q
    ||||||||||||| ||||||||||||||||||||       ||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34483289 tcacacatattaagaaagtggattgagtcattgtaaaaaa-tactatttttcctgttatgcccttgtcttggaaacatgacttttgaactccaccaatga 34483387  T
Q  218 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 317  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34483388 aaaatcattgaaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaatagaatgacttttgt 34483487  T
Q  318 atacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||||||||    
T  34483488 atacttttgcttacatttgagaccaacaa 34483516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 79 - 346
Target Start/End: Complemental strand, 28299684 - 28299417
Alignment:
Q  79 atactccctccggtcttgaatgtaagaaacnnnnnnnnn-tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatg 177  Q
    |||||||||||||||||||||||||||||           ||||| ||||||| ||||||||||||||||||||       || ||||||| ||||||||    
T  28299684 atactccctccggtcttgaatgtaagaaataaaaaaaatatcacaaatattaagaaagtggattgagtcattgtaaaaaa-taccatttttcctgttatg 28299586  T
Q  178 cccttgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgagg 277  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28299585 cccttgtcttggaaacatgacttttgaattccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaaataaatgagg 28299486  T
Q  278 ttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| ||||||    
T  28299485 ttaaaattggaatagtaatatttaatagaataacttttgtatacttttgcttacatttgagatcaacaa 28299417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 218 - 342
Target Start/End: Original strand, 44156783 - 44156907
Alignment:
Q  218 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 317  Q
    |||||||||| || | |||||||| |||||||| ||| ||||| |||||||| ||||||| ||||||||||||||| | ||||||||||||| |||| ||    
T  44156783 aaaatctttgaaaagtgttaaacaagggaatgtaaaataaatttgataaagttaatgagggtaaaattggaatagtgatatttaataggatggctttagt 44156882  T
Q  318 atacttttgcttacatttgagacca 342  Q
    |||||||||||||||||||| ||||    
T  44156883 atacttttgcttacatttgacacca 44156907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 29712929 - 29712866
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  29712929 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 29712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 45110903 - 45110966
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  45110903 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 45110966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 47880066 - 47880129
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  47880066 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 47880129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 118 - 346
Target Start/End: Complemental strand, 44370278 - 44370051
Alignment:
Q  118 tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgcccttgtcttggaaacatgacttttgaactccaccaatga 217  Q
    ||||||||||||| ||||||||| ||||||||||       || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44370278 tcacacatattaagaaagtggatcgagtcattgtaaaaaa-taccatttttcctgttatgcccttgtcttggaaacatgacttttgaactccaccaatga 44370180  T
Q  218 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44370179 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataacgtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 44370080  T
Q  318 atacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||| ||||||||    
T  44370079 atacttttgcttacatttgataccaacaa 44370051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 118 - 343
Target Start/End: Complemental strand, 36472223 - 36471999
Alignment:
Q  118 tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatgcccttgtcttggaaacatgacttttgaactccaccaatga 217  Q
    ||||||||||||| |||||||||||||||| |||       || ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  36472223 tcacacatattaagaaagtggattgagtcactgtaaaaaa-taccatttttccagttatgcccttgtcttggaaacatgacttttgaactccaccaatga 36472125  T
Q  218 aaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgt 317  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |    
T  36472124 aaaatatttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaatagtgacatttaataggatgatttttat 36472025  T
Q  318 atacttttgcttacatttgagaccaa 343  Q
    ||| ||||||||||||||||||||||    
T  36472024 atatttttgcttacatttgagaccaa 36471999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 338
Target Start/End: Original strand, 4516997 - 4517098
Alignment:
Q  238 aacatgggaatgtgaaacaaattggata-aagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttg 336  Q
    ||||||||||||||||||| |||||| | || ||||||||| |||||||| |||||| |||||||||||||||| ||   || ||||||  |||||||||    
T  4516997 aacatgggaatgtgaaacagattggaaataaataaatgagggtaaaattgaaatagtgacatttaataggatgatttaattaaacttttcattacatttg 4517096  T
Q  337 ag 338  Q
    ||    
T  4517097 ag 4517098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 41331921 - 41331984
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  41331921 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 41331984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 51058106 - 51058169
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  51058106 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 51058169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 34022283 - 34022222
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagac 340  Q
    ||||||||||||||||||||||| |||| |   |||  ||||||||| ||||||||||||||    
T  34022283 taaaattggaatagtaacatttattaggttatttttactatactttttcttacatttgagac 34022222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 43020711 - 43020774
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttg-tatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| | ||||||  ||||||||| ||||||||||||||||    
T  43020711 taaaattggaatagtagcatttattaggtt-acttttactatactttttcttacatttgagacca 43020774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 79 - 346
Target Start/End: Original strand, 123083 - 123350
Alignment:
Q  79 atactccctccggtcttgaatgtaagaaacnnnnnnnnn-tcacacatattaaaaaagtggattgagtcattgtnnnnnnntatcattttttctgttatg 177  Q
    ||||||||||||||||||||||||||||||          ||||||||||||| ||||||||||||||||||||       || ||||||| ||||||||    
T  123083 atactccctccggtcttgaatgtaagaaacaaaaaaaaaatcacacatattaagaaagtggattgagtcattgtaaaaaa-taccatttttcctgttatg 123181  T
Q  178 cccttgtcttggaaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgagg 277  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  123182 cccttgtcttggaaacatgacttttgaactccaacaatgaaaaatatttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaga 123281  T
Q  278 ttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaacaa 346  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  123282 ttaaaattggaatagtaacatttaatagaatgacttttgtatacttttccttacatttgagaccaacaa 123350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 190 - 340
Target Start/End: Original strand, 45803220 - 45803370
Alignment:
Q  190 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaa 289  Q
    ||||| |||||||||| ||||| |||||||||||||||||||| |||||||||| || |||||||    ||||||||||| ||||||| |||||||| ||    
T  45803220 aaacacgacttttgaattccacaaatgaaaaatctttggaatgggttaaacatgagagtgtgaaaatttttggataaagttaatgaggataaaattgaaa 45803319  T
Q  290 tagtaacatttaataggatgacttttgtatacttttgcttacatttgagac 340  Q
    |||| |||||||||| ||||| ||||||||| || ||||||||||||||||    
T  45803320 tagtgacatttaatatgatgatttttgtatatttgtgcttacatttgagac 45803370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 18036529 - 18036428
Alignment:
Q  238 aacatgggaatgtgaaacaaattggata-aagtaaatgaggttaaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttg 336  Q
    ||||||||||||||||||| |||||| | || ||||||||| |||||||| |||||| |||||||||||||||| ||   || ||||||  |||||||||    
T  18036529 aacatgggaatgtgaaacagattggaaataaataaatgagggtaaaattgaaatagtgacatttaataggatgatttaattaaacttttcattacatttg 18036430  T
Q  337 ag 338  Q
    ||    
T  18036429 ag 18036428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 50390895 - 50390831
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagaccaa 343  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| |||||||||||||||||    
T  50390895 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccaa 50390831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 1717297 - 1717238
Alignment:
Q  283 attggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||| |||||| |||| ||| |||  ||||||||| ||||||||||||||||    
T  1717297 attggaatagtagcatttattaggttgattttactatactttttcttacatttgagacca 1717238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 46109134 - 46109071
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  46109134 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 46109071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 52606113 - 52606176
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  52606113 taaaattggaatagtagcatttattaggttgtttttactatactttttcttacatttgagacca 52606176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 52772416 - 52772353
Alignment:
Q  279 taaaattggaatagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    |||||||||||||||| |||||| |||| ||  |||  ||||||||| ||||||||||||||||    
T  52772416 taaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 52772353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 190 - 342
Target Start/End: Complemental strand, 141100 - 140948
Alignment:
Q  190 aaacatgacttttgaactccaccaatgaaaaatctttggaatgcgttaaacatgggaatgtgaaacaaattggataaagtaaatgaggttaaaattggaa 289  Q
    ||||||||||||||||||  ||||||||| ||||||| ||| | |||||||||||||||||||||||||||  ||||||  ||||||| | | |||||||    
T  141100 aaacatgacttttgaactaaaccaatgaataatctttagaaagtgttaaacatgggaatgtgaaacaaattaaataaagataatgagggtgagattggaa 141001  T
Q  290 tagtaacatttaataggatgacttttgtatacttttgcttacatttgagacca 342  Q
    ||| |||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  141000 tagcaacatttaataggacgacttttgtatatttttgcttatatttgagacca 140948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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