View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504-Insertion-17 (Length: 341)
Name: NF1504-Insertion-17
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 23368614 - 23368282
Alignment:
| Q |
8 |
gatggaactgttaaaatattatcttagtatgtcaatgattaaaatatgtaagtgtgagtccaatcttgcagattaagaatattgattcagacatataaat |
107 |
Q |
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| T |
23368614 |
gatggaactgttaaaatattatcatagtatgtcaatgattaaaatatgtaagtgtgagtccaatcttgcagattaagaatattgattcagacatataaat |
23368515 |
T |
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| Q |
108 |
aactcacatgaattcaaagaagttagagacgggttaattattgattcaaatgatctcctcgtttcagattttgaatcatttgcttgctctatatatgaca |
207 |
Q |
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| T |
23368514 |
aactcacatgaattcatagaagttagagacgggttaattattgattcagatgatctcctcgtttctgattttgaatcatttgcttgctctatagatgaca |
23368415 |
T |
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| Q |
208 |
atgcctcacttgaatctacattgtagcaacaataattataaaacatnnnnnnnnnncctttgaattggtttggccatacttcaacttggaagactattaa |
307 |
Q |
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| T |
23368414 |
atgcctcacttgaatctacattgtagcaacaataattataaaaca-aaaaaaaaaacctttgaattggtttggccatacttcaacttggaagactattaa |
23368316 |
T |
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| Q |
308 |
attttgtaggcaaaaccacatgctatataagtac |
341 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
23368315 |
attttgtaggcaaaatcacatgctatataagtac |
23368282 |
T |
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