View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504-Insertion-18 (Length: 345)

Name: NF1504-Insertion-18
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504-Insertion-18
NF1504-Insertion-18
[»] chr3 (1 HSPs)
chr3 (110-345)||(32809826-32810060)
[»] chr5 (2 HSPs)
chr5 (118-233)||(34946018-34946132)
chr5 (118-220)||(12616410-12616512)
[»] chr1 (3 HSPs)
chr1 (174-241)||(8965692-8965758)
chr1 (254-339)||(16937991-16938076)
chr1 (277-345)||(43135297-43135365)
[»] chr2 (1 HSPs)
chr2 (229-331)||(21569605-21569707)
[»] chr8 (1 HSPs)
chr8 (174-337)||(33564243-33564404)
[»] chr4 (3 HSPs)
chr4 (279-328)||(35345400-35345449)
chr4 (176-247)||(31858385-31858455)
chr4 (174-338)||(51108666-51108829)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 110 - 345
Target Start/End: Complemental strand, 32810060 - 32809826
Alignment:
Q  110 ctagcggtactttatatgatgttatacaattgccttttttcactcaatatattggatcataattacttaagtttttaggtttaattgcactattccttaa 209  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32810060 ctagcggtactttatatgatgctatacaattgccttttttcactcaatatattggatcataatcacttaagtttttaggtttaattgcactattccttaa 32809961  T
Q  210 ctcaaatccttaaaaagagaaaaagaaagtggaggtttgtctataatttacaaaagaattataatttttaactagaatctcaatttagtatttctcattg 309  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||    
T  32809960 ctcaaatcctt-aaaagagaaaaagaaagtggaggtttgtctacaatttacaaaagaatcatatttcttaactagaatcccaatttagtatttctcattg 32809862  T
Q  310 caattttactttgaaattttgattcattgtctgtga 345  Q
    |||||||||||||||||||||| |||||||||||||    
T  32809861 caattttactttgaaattttgactcattgtctgtga 32809826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 34946132 - 34946018
Alignment:
Q  118 actttatatgatgttatacaattgccttttttcactcaatatattggatcataattacttaagtttttaggtttaattgcactattccttaactcaaatc 217  Q
    |||||||||||||||||| |||   ||||||| |||||||||||| || | |||   ||||| ||||||||||||||||||||| ||||||||||| |||    
T  34946132 actttatatgatgttatataatgaactttttttactcaatatattagaccttaaactcttaaatttttaggtttaattgcactaatccttaactcatatc 34946033  T
Q  218 cttaaaaagagaaaaa 233  Q
    | | ||||||||||||    
T  34946032 cct-aaaagagaaaaa 34946018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 12616410 - 12616512
Alignment:
Q  118 actttatatgatgttatacaattgccttttttcactcaatatattggatcataattacttaagtttttaggtttaattgcactattccttaactcaaatc 217  Q
    ||||||||||||||| || |||   ||||||| | |||||||||||||   |||  | |||||||||||||||||| ||||||| | ||||  |||||||    
T  12616410 actttatatgatgttgtataatatactttttttattcaatatattggacactaaacaattaagtttttaggtttaactgcactaattcttatttcaaatc 12616509  T
Q  218 ctt 220  Q
    |||    
T  12616510 ctt 12616512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 8965692 - 8965758
Alignment:
Q  174 acttaagtttttaggtttaattgcactattccttaactcaaatccttaaaaagagaaaaagaaagtgg 241  Q
    |||||||||||||||||||||| |||||| | ||||||||||||||| || |||||||||||||||||    
T  8965692 acttaagtttttaggtttaatttcactatccattaactcaaatcctt-aatagagaaaaagaaagtgg 8965758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 16938076 - 16937991
Alignment:
Q  254 aatttacaaaagaattataatttttaactagaatctcaatttagtatttctcattgcaattttactttgaaattttgattcattgt 339  Q
    |||||||||||| |  |||||  ||||| ||||||||  ||| | ||| |||||||||||||| |||||||||||||| |||||||    
T  16938076 aatttacaaaagtaccataatgcttaacaagaatctcgtttttgaattcctcattgcaattttgctttgaaattttgactcattgt 16937991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 43135297 - 43135365
Alignment:
Q  277 ttaactagaatctcaatttagtatttctcattgcaattttactttgaaattttgattcattgtctgtga 345  Q
    ||||||||||||||||||||| ||| |||| | |||||||||||  ||||||  | ||||||| |||||    
T  43135297 ttaactagaatctcaatttaggattcctcactacaattttacttaaaaatttcaactcattgtttgtga 43135365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 21569707 - 21569605
Alignment:
Q  229 aaaaagaaagtggaggtttgtctataatttacaaaagaattataatttttaactagaatctcaatttagtatttctcattgcaattttactttgaaattt 328  Q
    |||||||| |||| | ||||||  |||||| |||| |||  ||||| |||| |||| |||||||||||  |||||| ||||||||||||||| |||||||    
T  21569707 aaaaagaacgtggggttttgtcggtaattttcaaatgaaccataatctttagctagtatctcaatttacaatttcttattgcaattttacttagaaattt 21569608  T
Q  329 tga 331  Q
    |||    
T  21569607 tga 21569605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 337
Target Start/End: Original strand, 33564243 - 33564404
Alignment:
Q  174 acttaagtttttaggtttaattgcactattccttaactcaaatccttaaaaagagaaaaagaaagtggaggtttgtctataatttacaaaagaattataa 273  Q
    |||||| ||||||| ||||||||||||| ||||||| |  ||| ||| |||||  ||||||||||||| | ||||| |  ||||||||||| || | |||    
T  33564243 acttaaatttttagatttaattgcactaatccttaatttgaattctt-aaaagcaaaaaagaaagtgg-gttttgtttgcaatttacaaaaaaactctaa 33564340  T
Q  274 tttttaactagaatctcaatttagtatttctcattgcaattttactttgaaattttgattcatt 337  Q
    |  | || |||||| ||||||||| ||| ||| |||||||||| ||| |||||| ||| |||||    
T  33564341 tcgtaaattagaatatcaatttagaattcctcgttgcaattttgcttagaaattctgactcatt 33564404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 35345400 - 35345449
Alignment:
Q  279 aactagaatctcaatttagtatttctcattgcaattttactttgaaattt 328  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| |||||||    
T  35345400 aactagaatctcaatttaggatttttcattgcaatttttcttagaaattt 35345449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 31858455 - 31858385
Alignment:
Q  176 ttaagtttttaggtttaattgcactattccttaactcaaatccttaaaaagagaaaaagaaagtggaggttt 247  Q
    |||||||| || |||||||||||||| |  ||||||||||||||| ||||||||| || ||||||| |||||    
T  31858455 ttaagtttctaagtttaattgcactaatatttaactcaaatcctt-aaaagagaataataaagtggtggttt 31858385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 338
Target Start/End: Original strand, 51108666 - 51108829
Alignment:
Q  174 acttaagtttttaggtttaattgcactattccttaactcaaatccttaaaaagagaaaaagaaagtggaggtttgtctataatttacaaaagaattataa 273  Q
    |||||| ||| || ||||||||||| ||  |||||||| |||| | | ||| |||| |||||||   ||| ||| |||||||||||||||||||  | ||    
T  51108666 acttaattttctaagtttaattgcattaacccttaacttaaattcgtcaaa-gagagaaagaaaacagagttttatctataatttacaaaagaaccacaa 51108764  T
Q  274 tttttaactagaatctcaatttagtatttctcattgcaattttactttgaaattttgattcattg 338  Q
    |  |||||||||||  |||||||  |||  || ||||||||| |||| ||||||| || ||||||    
T  51108765 tccttaactagaattccaatttatgattcttctttgcaatttcacttagaaatttcgactcattg 51108829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University