View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504-Insertion-19 (Length: 372)

Name: NF1504-Insertion-19
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504-Insertion-19
NF1504-Insertion-19
[»] chr7 (4 HSPs)
chr7 (142-233)||(48187270-48187361)
chr7 (306-371)||(48187136-48187201)
chr7 (139-197)||(42648084-42648142)
chr7 (163-208)||(1101272-1101317)
[»] chr4 (6 HSPs)
chr4 (139-197)||(16833998-16834056)
chr4 (148-225)||(39920336-39920412)
chr4 (139-186)||(41763524-41763571)
chr4 (139-184)||(12099830-12099875)
chr4 (163-208)||(56398003-56398048)
chr4 (139-195)||(55719929-55719985)
[»] chr2 (5 HSPs)
chr2 (139-197)||(16464835-16464893)
chr2 (139-197)||(5709223-5709281)
chr2 (139-209)||(6747042-6747112)
chr2 (86-121)||(37253820-37253855)
chr2 (160-209)||(41770378-41770427)
[»] chr6 (5 HSPs)
chr6 (139-183)||(8446007-8446051)
chr6 (139-183)||(8454811-8454855)
chr6 (73-121)||(15545061-15545109)
chr6 (8-39)||(15544983-15545014)
chr6 (139-184)||(388428-388473)
[»] chr3 (1 HSPs)
chr3 (139-196)||(45345260-45345317)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 48187361 - 48187270
Alignment:
Q  142 ataaacaaacacacaattttagacacaaatacgacatcaatggcaatttcgtaattatcactaaagtgaaaaggacataattgacatttcac 233  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  48187361 ataaacaaacacacaattttagacacaaatacgacaccaatggcaatctcgtaattatcactaaagtgcaaaggacagaattgacatttcac 48187270  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 48187201 - 48187136
Alignment:
Q  306 agctggttctttcacggccaaatttcgacgacggagaaggcgactaaaatggcggtgggacaacaa 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48187201 agctggttctttcacggccaaatttcgacgacggagaaggcgactaaaatggcggtgggacaacaa 48187136  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 42648142 - 42648084
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatggcaatttcgtaatt 197  Q
    |||||||||||||||| |  ||| |||||||||||||||||||||||| ||| ||||||    
T  42648142 atgataaacaaacacatatattttgacacaaatacgacatcaatggcatttttgtaatt 42648084  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 1101272 - 1101317
Alignment:
Q  163 gacacaaatacgacatcaatggcaatttcgtaattatcactaaagt 208  Q
    ||||||||||||||| |||||||||||| |||||||||| ||||||    
T  1101272 gacacaaatacgacagcaatggcaattttgtaattatcattaaagt 1101317  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 16833998 - 16834056
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatggcaatttcgtaatt 197  Q
    |||||||||||||||| || ||| |||||||||||||||||| ||||| ||||||||||    
T  16833998 atgataaacaaacacataacttttgacacaaatacgacatcagtggcattttcgtaatt 16834056  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 39920336 - 39920412
Alignment:
Q  148 aaacacacaattttagacacaaatacgacatcaatggcaatttcgtaattatcactaaagtgaaaaggacataattga 225  Q
    ||||||| ||| |||||||||||||||||| |||||||||  ||||||||  ||| |||||| ||||| |||||||||    
T  39920336 aaacacataatcttagacacaaatacgacaccaatggcaaactcgtaatttccaccaaagtg-aaagggcataattga 39920412  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 41763524 - 41763571
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatggca 186  Q
    ||||||||||||||||  | |||||||||| |||||||||||||||||    
T  41763524 atgataaacaaacacattagtttagacacagatacgacatcaatggca 41763571  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 12099875 - 12099830
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatgg 184  Q
    |||||||||||||||| | ||| |||||||||||||||| ||||||    
T  12099875 atgataaacaaacacagattttgagacacaaatacgacaccaatgg 12099830  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 56398003 - 56398048
Alignment:
Q  163 gacacaaatacgacatcaatggcaatttcgtaattatcactaaagt 208  Q
    ||||||||| ||||| |||||||||||| |||||||||| ||||||    
T  56398003 gacacaaatccgacaacaatggcaattttgtaattatcattaaagt 56398048  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 55719929 - 55719985
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatggcaatttcgtaa 195  Q
    |||||||||||||||| || ||||||||||||||| ||| || || || ||||||||    
T  55719929 atgataaacaaacacataaatttagacacaaatacaacaccagtgtcattttcgtaa 55719985  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 16464893 - 16464835
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatggcaatttcgtaatt 197  Q
    |||||||||||||||| || ||| |||||||||||||||||| ||||| ||||||||||    
T  16464893 atgataaacaaacacataacttttgacacaaatacgacatcagtggcattttcgtaatt 16464835  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 5709223 - 5709281
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatggcaatttcgtaatt 197  Q
    |||||||||||||||| |  ||| |||||||||||||||||| ||||| ||||||||||    
T  5709223 atgataaacaaacacatatattttgacacaaatacgacatcagtggcattttcgtaatt 5709281  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 6747112 - 6747042
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatggcaatttcgtaattatcactaaagtg 209  Q
    ||||||||||||||||||| ||| ||||||||||| ||| ||||| ||||||  |||||| ||| ||||||    
T  6747112 atgataaacaaacacacaaattttgacacaaatacaacaccaatgacaattttataattaccacaaaagtg 6747042  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 37253820 - 37253855
Alignment:
Q  86 tggtttggtttgagaggatagagttttgggtttgcg 121  Q
    |||||||||||| |||||||||||||||||||||||    
T  37253820 tggtttggtttgggaggatagagttttgggtttgcg 37253855  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 41770427 - 41770378
Alignment:
Q  160 ttagacacaaatacgacatcaatggcaatttcgtaattatcactaaagtg 209  Q
    |||||||||||||||||| |||||||||  ||||||||  ||||||||||    
T  41770427 ttagacacaaatacgacaccaatggcaaactcgtaatttccactaaagtg 41770378  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 8446007 - 8446051
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatg 183  Q
    |||||||||||||||| | |||| |||||||||||||||||||||    
T  8446007 atgataaacaaacacaaattttttgacacaaatacgacatcaatg 8446051  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 8454811 - 8454855
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatg 183  Q
    |||||||||||||||| | |||| |||||||||||||||||||||    
T  8454811 atgataaacaaacacaaattttttgacacaaatacgacatcaatg 8454855  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 15545061 - 15545109
Alignment:
Q  73 gacataacagaagtggtttggtttgagaggatagagttttgggtttgcg 121  Q
    |||| |||||||||||||||||||| ||||||||| |||| ||||||||    
T  15545061 gacagaacagaagtggtttggtttgggaggatagacttttcggtttgcg 15545109  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 15544983 - 15545014
Alignment:
Q  8 agagagaccgttgatgccattgggttccacac 39  Q
    ||||||||||||||||||||||||||||||||    
T  15544983 agagagaccgttgatgccattgggttccacac 15545014  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 388428 - 388473
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatgg 184  Q
    |||||||||||||||| | ||| |||||||||||||||| ||||||    
T  388428 atgataaacaaacacagattttgagacacaaatacgacaccaatgg 388473  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 45345317 - 45345260
Alignment:
Q  139 atgataaacaaacacacaattttagacacaaatacgacatcaatggcaatttcgtaat 196  Q
    |||||| | |||||| || |||||||||||||||||||||||  ||||| ||||||||    
T  45345317 atgatatataaacacgcatttttagacacaaatacgacatcaggggcaaattcgtaat 45345260  T

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