View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504-Insertion-2 (Length: 446)

Name: NF1504-Insertion-2
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504-Insertion-2
NF1504-Insertion-2
[»] chr1 (2 HSPs)
chr1 (6-251)||(51740151-51740396)
chr1 (251-441)||(44541235-44541426)
[»] chr2 (11 HSPs)
chr2 (251-446)||(295806-296000)
chr2 (251-441)||(302447-302636)
chr2 (372-441)||(45485783-45485852)
chr2 (372-441)||(39190645-39190714)
chr2 (374-441)||(18164000-18164067)
chr2 (374-441)||(21794487-21794554)
chr2 (374-441)||(43081634-43081701)
chr2 (373-424)||(29960425-29960476)
chr2 (374-413)||(13273380-13273419)
chr2 (372-400)||(45497050-45497078)
chr2 (372-400)||(45504792-45504820)
[»] chr8 (5 HSPs)
chr8 (253-441)||(37786460-37786648)
chr8 (251-441)||(37186664-37186855)
chr8 (251-402)||(37790983-37791134)
chr8 (374-441)||(11096194-11096261)
chr8 (402-441)||(37791180-37791219)
[»] chr5 (6 HSPs)
chr5 (251-424)||(690121-690282)
chr5 (373-441)||(32090273-32090341)
chr5 (374-441)||(9503718-9503785)
chr5 (372-441)||(3627557-3627626)
chr5 (374-441)||(9507700-9507767)
chr5 (372-441)||(34854120-34854194)
[»] chr3 (7 HSPs)
chr3 (253-344)||(41925118-41925209)
chr3 (354-441)||(28920250-28920337)
chr3 (374-441)||(531527-531594)
chr3 (385-441)||(4315629-4315685)
chr3 (373-441)||(47743885-47743953)
chr3 (400-441)||(32813655-32813696)
chr3 (374-418)||(55418479-55418523)
[»] chr4 (8 HSPs)
chr4 (366-439)||(5715362-5715435)
chr4 (374-441)||(53008334-53008402)
chr4 (373-438)||(50935720-50935785)
chr4 (376-438)||(50911938-50912000)
chr4 (374-441)||(53011226-53011294)
chr4 (391-441)||(16853976-16854026)
chr4 (251-295)||(50912142-50912186)
chr4 (251-310)||(50935909-50935968)
[»] chr7 (4 HSPs)
chr7 (372-441)||(22582333-22582402)
chr7 (371-441)||(293248-293319)
chr7 (386-441)||(45937905-45937960)
chr7 (389-441)||(297141-297193)
[»] scaffold0038 (1 HSPs)
scaffold0038 (367-441)||(49448-49522)
[»] chr6 (3 HSPs)
chr6 (367-441)||(28249286-28249360)
chr6 (374-441)||(7501366-7501433)
chr6 (374-441)||(31888560-31888627)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 251
Target Start/End: Original strand, 51740151 - 51740396
Alignment:
Q  6 cagatttgttacgaatagtatactagaagctctgtccaaaaactgtcgtaatttagaagagttggtattgcaaggatgcacaagtatcactgacaatggg 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51740151 cagatttgttacggatagtatactagaagctctgtccaaaaactgtcgtaatttagaagagttggtattgcaaggatgcacaagtatcactgacaatggg 51740250  T
Q  106 ctgatgagccttgcaagtggttgccaacggatcaagtttttggacatcaataaatgcagtaatgtcagtgatgttggggtttatagtatttgtaacgctt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  51740251 ctgatgagccttgcaagtggttgccaacggatcaagtttttggacatcaataaatgcagtactgtcagtgatgttggggtttctagtatttgtaacgctt 51740350  T
Q  206 gttcttcttctctcaagacattgaaattgttagattgctacagaat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  51740351 gttcttcttctctcaagacattgaaattgttagattgctacagaat 51740396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 251 - 441
Target Start/End: Original strand, 44541235 - 44541426
Alignment:
Q  251 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactg 350  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||    
T  44541235 tgttagaacaatcgctatgttctatgcgcagcggaaagtgcttataaaaataagctgtttaagagtaagatgaaaataacagagaaattgtgataaactg 44541334  T
Q  351 aaatattgattaatgattg-tttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||  |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44541335 aacaattgattaataattgttttttatttacaacacatgagtgagtatatatacaactggacattgtaacaaactcctctaacaaactaact 44541426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 251 - 446
Target Start/End: Complemental strand, 296000 - 295806
Alignment:
Q  251 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactg 350  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||| |||| |||||    
T  296000 tgttagaacaatcgctatgttctatgcacagcggaaagtgcttataaaa-taagttgtttaagagcaagatgaaaataacagagaaattatgataaactg 295902  T
Q  351 aaatattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaactttcct 446  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  295901 aaaaattgattaatgattgttattatttacaacacatgagtgagtatatatacaactggacattgtaacaaactcctctaacaaactaactatcct 295806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 251 - 441
Target Start/End: Complemental strand, 302636 - 302447
Alignment:
Q  251 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactg 350  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||||||||||||| |||||    
T  302636 tgttagaacaatcgctatgttctatgcgcagcggaaagtgcttataaaaataagatgtttatgagcaagatgaaaataatagagaaattgtgataaactg 302537  T
Q  351 aaatattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  302536 aaaaattgattaatgattgttattatttacaacacat-agtgagtatatatacaactggacattgtaacaaactcctctaacaaactaact 302447  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 45485783 - 45485852
Alignment:
Q  372 tttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45485783 tttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 45485852  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 39190645 - 39190714
Alignment:
Q  372 tttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39190645 tttatttacaacacatgagtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaact 39190714  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 18164067 - 18164000
Alignment:
Q  374 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18164067 tatttacaacacttgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 18164000  T

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Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 374 - 441
Target Start/End: Original strand, 21794487 - 21794554
Alignment:
Q  374 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21794487 tatttataacacatgagtaagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 21794554  T

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Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 374 - 441
Target Start/End: Original strand, 43081634 - 43081701
Alignment:
Q  374 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||    
T  43081634 tatttacaacacatgagtgagtacatatacaattggacgttgtaacaaactcctataacaaactaact 43081701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 29960476 - 29960425
Alignment:
Q  373 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaact 424  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  29960476 ttatttacaacacataagtgagtatatatacaactagacgttgtaacaaact 29960425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 413
Target Start/End: Complemental strand, 13273419 - 13273380
Alignment:
Q  374 tatttacaacacatgagtgagtatatatacaactggacgt 413  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  13273419 tatttacaacacatgagtgaatatatatacaactggacgt 13273380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 400
Target Start/End: Original strand, 45497050 - 45497078
Alignment:
Q  372 tttatttacaacacatgagtgagtatata 400  Q
    |||||||||||||||||||||||||||||    
T  45497050 tttatttacaacacatgagtgagtatata 45497078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 400
Target Start/End: Original strand, 45504792 - 45504820
Alignment:
Q  372 tttatttacaacacatgagtgagtatata 400  Q
    |||||||||||||||||||||||||||||    
T  45504792 tttatttacaacacatgagtgagtatata 45504820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 253 - 441
Target Start/End: Original strand, 37786460 - 37786648
Alignment:
Q  253 ttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactgaa 352  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||| |||| |||||||    
T  37786460 ttagaacaatcgttatgttctatgcgcagcggaaagtgcttataaaaataagttgtttaagagtaagatgaaaataacagagaaattatgataaactgaa 37786559  T
Q  353 atattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  37786560 aaattgattaatgattgttattatttacaacacatgagtgaatatatatacaactggacgttgtaacaaagtcctctaacaaactaact 37786648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 251 - 441
Target Start/End: Original strand, 37186664 - 37186855
Alignment:
Q  251 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgttt-aagagcaagatgaaaataacagagaaattgtgatcaact 349  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||  ||||    
T  37186664 tgttagaacaatcgctatgttctatgcgcagcggaaggtgcttataaaaataagctgttttaagagcaatatgaaaataacagagaaattgtgaaaaact 37186763  T
Q  350 gaaatattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
     ||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37186764 aaaaaaatgattattgattgttattatttacaacacatgagtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaact 37186855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 251 - 402
Target Start/End: Original strand, 37790983 - 37791134
Alignment:
Q  251 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactg 350  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  37790983 tgttagaacaatcgctatgttctatgcgcagcggaaagtgcttataaaaataagctgtttaagagcaagatgaaaataacagagaaattgtgataaactg 37791082  T
Q  351 aaatattgattaatgattgtttttatttacaacacatgagtgagtatatata 402  Q
    ||| |||||||||| |||||| |||| |||||||||| ||||| ||||||||    
T  37791083 aaaaattgattaataattgttattatgtacaacacatcagtgaatatatata 37791134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 11096261 - 11096194
Alignment:
Q  374 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11096261 tatttacaacacatgagtgagtatatatacaactgaacgttgtaacaaactcctctaacaaactaact 11096194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 441
Target Start/End: Original strand, 37791180 - 37791219
Alignment:
Q  402 acaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  37791180 acaactgaacgttgtaacaaactcctctaacaaactaact 37791219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 251 - 424
Target Start/End: Complemental strand, 690282 - 690121
Alignment:
Q  251 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgatcaactg 350  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||  ||||||| || |||||||||||||||||||||||||||| |        
T  690282 tgttagaacaatcgctatgttctatgcgcagcggaaagtgcttataaatataagttgtttaaaagtaagatgaaaataacagagaaattgtgataa---- 690187  T
Q  351 aaatattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaact 424  Q
            |||||| |||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  690186 --------attaataattgttattatttacaacacatgagtgagtatatatacaactgaacattgtaacaaact 690121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 32090341 - 32090273
Alignment:
Q  373 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32090341 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 32090273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 9503785 - 9503718
Alignment:
Q  374 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9503785 tatttacaacacatgagtgagtatatatataactggacgttgtaacaaactcctctaacaaactaact 9503718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 372 - 441
Target Start/End: Complemental strand, 3627626 - 3627557
Alignment:
Q  372 tttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||    
T  3627626 tttatttacaacacatgagtgagtatatatacatctggacgttgtaacaaacttctctaataaactaact 3627557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 9507767 - 9507700
Alignment:
Q  374 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||    
T  9507767 tatttacaacacatgagtgggtatatatataactggacgttgtaacaaactcctttaacaaactaact 9507700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 372 - 441
Target Start/End: Complemental strand, 34854194 - 34854120
Alignment:
Q  372 tttatttacaacacatgagtgagtatatataca-----actggacgttgtaacaaactcctctaacaaactaact 441  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||| |||||    
T  34854194 tttatttacaacacatgagtgagtatatatacaactgaactggacgttgtaacaaactcctctaacaaattaact 34854120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 253 - 344
Target Start/End: Original strand, 41925118 - 41925209
Alignment:
Q  253 ttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgtttaagagcaagatgaaaataacagagaaattgtgat 344  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  41925118 ttagaacaatcgctatgttctatgcgcagcggaaagtgcttataaaaataagttgtttaagagcaagatgaaaataacagagaaattgtgat 41925209  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 354 - 441
Target Start/End: Original strand, 28920250 - 28920337
Alignment:
Q  354 tattgattaatgattgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  28920250 tattgatcaatgattgttattatttacaacatatgagtgagtatatatacaactggacgttataacaaactcctctaataaactaact 28920337  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 374 - 441
Target Start/End: Original strand, 531527 - 531594
Alignment:
Q  374 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  531527 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaaaaaactaact 531594  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 4315685 - 4315629
Alignment:
Q  385 catgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4315685 catgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 4315629  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 47743953 - 47743885
Alignment:
Q  373 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  47743953 ttatttacaacacatgagtgaatatatttacaactagacgttgtaacaaactcctgtaacaaactaact 47743885  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 32813696 - 32813655
Alignment:
Q  400 atacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32813696 atacaactggacgttgtaacaaactcctctaacaaactaact 32813655  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 55418523 - 55418479
Alignment:
Q  374 tatttacaacacatgagtgagtatatatacaactggacgttgtaa 418  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  55418523 tatttacaatacatgagtgagtatatatacaactggaagttgtaa 55418479  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 5715435 - 5715362
Alignment:
Q  366 attgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaa 439  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5715435 attgattttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaa 5715362  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 53008402 - 53008334
Alignment:
Q  374 tatttacaacacatga-gtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53008402 tatttacaacacaggaagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 53008334  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 50935785 - 50935720
Alignment:
Q  373 ttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaacta 438  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||    
T  50935785 ttatttacaacacatgagtgagtatatatacaactagatgttgtaacaaactcctctaactaacta 50935720  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 50912000 - 50911938
Alignment:
Q  376 tttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaacta 438  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  50912000 tttacaacacatgagtgagtatatatacaactgggtgttgtaacaaactcctctaactaacta 50911938  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 53011294 - 53011226
Alignment:
Q  374 tatttacaacacatga-gtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  53011294 tatttacaacacaggaagtgagtatatatacaactggacgttttaacaaaatcctctaacaaactaact 53011226  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 16853976 - 16854026
Alignment:
Q  391 tgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16853976 tgagtatatatacaactggacgttgtaacaaattcctctaacaaactaact 16854026  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 50912186 - 50912142
Alignment:
Q  251 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttat 295  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||    
T  50912186 tgttagaacaatcactatgttctatgcgcaacggaaagtgcttat 50912142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 50935968 - 50935909
Alignment:
Q  251 tgttagaataatcgctatgttctatgcgcagcggaaagtgcttataaaaataaactgttt 310  Q
    |||||||| |||| ||||||| ||||||||| |||||||||||||  |||||| ||||||    
T  50935968 tgttagaacaatcactatgttatatgcgcagtggaaagtgcttatggaaataagctgttt 50935909  T

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Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 22582333 - 22582402
Alignment:
Q  372 tttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22582333 tttatttacaacacatgagtgagtatatatacaactggacgttgtaccaaactcctctaacaaactaact 22582402  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 293319 - 293248
Alignment:
Q  371 ttttatttacaa-cacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    |||||||||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  293319 ttttatttacaaacatatgagtgagtatatatacaactagacgttgtaacaaacccctctaacaaactaact 293248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 45937960 - 45937905
Alignment:
Q  386 atgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45937960 atgagtgagtatatatacaactggacgttgtaacaaactcctctaactaactaact 45937905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 389 - 441
Target Start/End: Complemental strand, 297193 - 297141
Alignment:
Q  389 agtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  297193 agtgagtatatatacaactagacgttgtaacaaactcctctaacaaactaact 297141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 367 - 441
Target Start/End: Complemental strand, 49522 - 49448
Alignment:
Q  367 ttgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  49522 ttgttattatttacaacacatgagtgagtatatatacaactagacgttgtaacaaacttctctaacaaactaact 49448  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 367 - 441
Target Start/End: Complemental strand, 28249360 - 28249286
Alignment:
Q  367 ttgtttttatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  28249360 ttgttattatttacaacacatgagtgagtatatatacaactagacgttgtaacaaacttctctaacaaactaact 28249286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 374 - 441
Target Start/End: Original strand, 7501366 - 7501433
Alignment:
Q  374 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  7501366 tatttacaacacatgagtgagtatataaacaactgggcgttgtaacaaactcctctaacaaactaact 7501433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 31888627 - 31888560
Alignment:
Q  374 tatttacaacacatgagtgagtatatatacaactggacgttgtaacaaactcctctaacaaactaact 441  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  31888627 tatttacaacacatgagtgagtatatatacaattgcacgttgtaacaaacttctctaacaaactaact 31888560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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