View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504-Insertion-20 (Length: 362)

Name: NF1504-Insertion-20
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504-Insertion-20
NF1504-Insertion-20
[»] chr1 (1 HSPs)
chr1 (8-362)||(32042112-32042468)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 362
Target Start/End: Original strand, 32042112 - 32042468
Alignment:
Q  8 agtagtagtacttagttgcacatttttggtacaaatatcttttgtagtgtactaaataacggttctcagaagcttattataggctctatgatctatctag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32042112 agtagtagtacttagttgcacatttttggtacaaatatcttttgtagtgtactaaataacggttctcagaagcttattataggctctatgatctatctag 32042211  T
Q  108 tactagttggagggaaattatattgtaaacattatataatttcattctaactgtnnnnnnnn-ttctgagtcatgtcccacaacttgattccaatgcgaa 206  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||         |||||||||||||||||||||||||||||||||||||    
T  32042212 tactagttggaggcaaattatattgtaaacattttataatttcattttaactgtaaaaaaaaattctgagtcatgtcccacaacttgattccaatgcgaa 32042311  T
Q  207 ataatttatatgatcattgaaaatttagtataaggttgaaatatgatgcatattgtaaacaaatgaattaatattgttatttgtcttctaagacaaaact 306  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32042312 ataatttatatgatcattgaaaatttagtataaggttgaagcatgatgcatattgtaaacaaattaattaatattgttatttgtcttctaagacaaaact 32042411  T
Q  307 cttgagctgagtgccaccattgggccc-aaggagttatgtatggtgtgggcacggtc 362  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32042412 cttgagctgagtgccaccattgggcccaaaggagttatgtatggtgtgggcacggtc 32042468  T

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