View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504-Insertion-22 (Length: 280)

Name: NF1504-Insertion-22
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504-Insertion-22
NF1504-Insertion-22
[»] chr1 (1 HSPs)
chr1 (8-280)||(9604935-9605211)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 9605211 - 9604935
Alignment:
Q  8 tttgagtcattatataccaaagttgattgtattgattgcatatgcctagcattatatagcccacgtactcaagttttttggacccatgatcgtgggacat 107  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9605211 tttgagtcat-atataccaaagttgtttgtattgattgcatatgcctagcattatatagcccacgtactcaagttttttggacccatgatcgtgtgacat 9605113  T
Q  108 tt--tttatatatatgaattgagggtgctaacaaagtgttt-agtaaagcttatatatcatcttgcttttctgaccaagttattaattcttacatgtaca 204  Q
    ||  | |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9605112 tttatatatatatatgaattgaaggtgctaacaaagtgtttgagtaaagcttatatatcatcttgcttttctgaccaagttattaattcttacatgtaca 9605013  T
Q  205 agatcaacttatatttaagagatg-ccacgtgtatgtgaaaactt-gggtaggatctttaaagtgtttctaattagta 280  Q
    | |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  9605012 aaatcaacttatatttgagagatgcccacgtgtatgtgaaaacttggggtaggatctttaaagtgtttctcattagta 9604935  T

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