View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504-Insertion-23 (Length: 244)
Name: NF1504-Insertion-23
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-23 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 40983373 - 40983162
Alignment:
| Q |
29 |
agtgggtattgattttataattggcactcgaagaaagaggcttgtgtgattaatctatctaaacattgtatccacgttgagaagcaagttgtgcaatttt |
128 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
40983373 |
agtggatattgattttataattggcactggaagaaagaggcttgtgtgattaatcta----aacattgtatccacgttgagaaaca-gttgtgcaatttt |
40983279 |
T |
|
| Q |
129 |
ttaaaaagaaaa-caagtaaattaacaaaactatcctttaatttcaagtggtttaaaatagtgaaaattggtctttgtcgaaatcaagtgcgtgtaagtt |
227 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40983278 |
ttaaaaagaaaatcaagtaaattaacaaaactatcctttaatttcaagtggtttaaaatagtgaaaattggtctttgtcgaaatcaagtgcgtgtaagtt |
40983179 |
T |
|
| Q |
228 |
gcaaacgtataccttaa |
244 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40983178 |
gcaaacgtataccttaa |
40983162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 40961872 - 40961804
Alignment:
| Q |
146 |
aaattaacaaaactatcctttaatttcaagtggtttaaaatagtgaaaattggtctttgtcgaaatcaag |
215 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| || ||||||| ||||||||||||||| |||||||| |
|
|
| T |
40961872 |
aaattgacaaaactatccttaaatttcaagtgactt-aaatagtagaaattggtctttgtcaaaatcaag |
40961804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 13386838 - 13386896
Alignment:
| Q |
145 |
taaattaacaaaactatcctttaatttcaagtggtttaaaatagtgaaaattggtcttt |
203 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||| | |||||||||||||||||| |||| |
|
|
| T |
13386838 |
taaattgacaaaactagcctttaacttcaagtgatataaaatagtgaaaattggacttt |
13386896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 13369103 - 13369151
Alignment:
| Q |
145 |
taaattaacaaaactatcctttaatttcaagtggtttaaaatagtgaaa |
193 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||| | ||||||||||||| |
|
|
| T |
13369103 |
taaattgacaaaactagcctttaacttcaagtgatataaaatagtgaaa |
13369151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 23630907 - 23630863
Alignment:
| Q |
153 |
caaaactatcctttaatttcaagtggtttaaaatagtgaaaattg |
197 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
23630907 |
caaaagtatcctttaatttcaagtgagttaaaatagtggaaattg |
23630863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University