View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504-Insertion-27 (Length: 270)
Name: NF1504-Insertion-27
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-27 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 32748672 - 32748410
Alignment:
| Q |
8 |
aaaaccttcttgatttcaaatagtggtagtacatacaataatcttacatcatgggatgataagagtgatgttgattgttgtttatgggagtgtgtcaagt |
107 |
Q |
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| T |
32748672 |
aaaaccttcttgatttcaaatagtggtagtacatacaataatcttacatcatgggatgataagagtgatgttgattgttgtttatgggagcgtgtcaagt |
32748573 |
T |
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| Q |
108 |
gcaaccactccagaggacatgtcatggatctcttgcttggtggagttacaattccaaccgatacaactgatgtctggctcctcaatttttcatactttct |
207 |
Q |
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| T |
32748572 |
gcaaccattccacaggacatgtcatagatctcttgcttggtggagttacaattccaaccgatacaactgatgactggctcctcaatttttcatactttct |
32748473 |
T |
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| Q |
208 |
ccctttcaaccatttagttcatcttgacttatcanctaactatttggatggttgggttgaaat |
270 |
Q |
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| T |
32748472 |
tcctttcaaccagttagttcatcttgacttaaaagctaactatttggatggttgggttgaaat |
32748410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 4914715 - 4914456
Alignment:
| Q |
8 |
aaaaccttcttgatttcaaatagtggtagtacatacaataatcttacatcatgggatgataagagtgatgttgattgttgtttatgggagtgtgtcaagt |
107 |
Q |
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|||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| ||||||||| |
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| T |
4914715 |
aaaaccttcttgatttcaaacagcactagtaaatacaataatcttacatcatgggat---aagagtgatgttgattgttgctcatgggagcgtgtcaagt |
4914619 |
T |
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| Q |
108 |
gcaaccactccagaggacatgtcatggatctcttgcttggtggagttacaattccaaccgatacaactgatgtctggctcctcaatttttcatactttct |
207 |
Q |
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| T |
4914618 |
gcaaccataccacaggacatgttatggatctcttgcttggaggagttacaattccaaccaatacaacttatctttggatcttcaacttttcatattttct |
4914519 |
T |
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| Q |
208 |
ccctttcaaccatttagttcatcttgacttatcanctaactatttggatggttgggttgaaat |
270 |
Q |
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| T |
4914518 |
tcctttcaaccatttagttcatcttgacttatcagctaactattttgatggttgggttgaaat |
4914456 |
T |
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