View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504-Insertion-28 (Length: 225)
Name: NF1504-Insertion-28
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-28 |
 | |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 1e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 1e-97
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 35421796 - 35421579
Alignment:
| Q |
8 |
atcttcttcctcaaatcaaatatccctgtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccaga |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35421796 |
atcttcttcctcaaatcaaatagccctgtttgtcattctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccaga |
35421697 |
T |
|
| Q |
108 |
ggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgacctggaccataa |
207 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
35421696 |
ggaacttactggtggtactaaagaatctgatggtttactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctgaaccataa |
35421597 |
T |
|
| Q |
208 |
cttgaggtgcttgcacta |
225 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35421596 |
cttgaggtgcttgcacta |
35421579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 53667783 - 53667944
Alignment:
| Q |
8 |
atcttcttcctcaaatcaaatatccctgtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccaga |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53667783 |
atcttcttcctcaaatcaaatacccctgtttatcattctccaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccagt |
53667882 |
T |
|
| Q |
108 |
ggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaa |
169 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
53667883 |
ggaacttactggtggtactaaagaatctgatggtttactagttggtgcttgagtagattcaa |
53667944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 53667946 - 53667974
Alignment:
| Q |
197 |
ctggaccataacttgaggtgcttgcacta |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
53667946 |
ctggaccataacttgaggtgcttgcacta |
53667974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 7e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 7e-93
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 12716216 - 12716433
Alignment:
| Q |
8 |
atcttcttcctcaaatcaaatatccctgtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccaga |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12716216 |
atcttcttcctcaaatcaaatacccctgtttttcattctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccaga |
12716315 |
T |
|
| Q |
108 |
ggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgacctggaccataa |
207 |
Q |
| |
|
| |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
12716316 |
gaaacttactggtggtactaaagaatatgatggtttactagttggtgcttgagtagattcaacactcttaggtttttattgtttgttagctggaccataa |
12716415 |
T |
|
| Q |
208 |
cttgaggtgcttgcacta |
225 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12716416 |
cttgaggtgcttgcacta |
12716433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 7e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 7e-93
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 18239242 - 18239025
Alignment:
| Q |
8 |
atcttcttcctcaaatcaaatatccctgtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccaga |
107 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
18239242 |
atcttcttccccaaatcaaatacccctgtttgtcattctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgttgtaccaga |
18239143 |
T |
|
| Q |
108 |
ggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgacctggaccataa |
207 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
18239142 |
ggaacttactggtggtactaaagaatctgatggtttactagttggtgcttgagtagattctacactcttaggtttttgttgtttgttagctggaccataa |
18239043 |
T |
|
| Q |
208 |
cttgaggtgcttgcacta |
225 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18239042 |
cttgaggtgcttgcacta |
18239025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 2e-90
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 25985874 - 25986091
Alignment:
| Q |
8 |
atcttcttcctcaaatcaaatatccctgtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccaga |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
25985874 |
atcttcttcctcaaatcaaatacccctgtttgtcattctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctgtaccata |
25985973 |
T |
|
| Q |
108 |
ggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgacctggaccataa |
207 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | ||||| ||||| |
|
|
| T |
25985974 |
ggaacttactggtggtactaaagaatctgatggtttactagttggtgcttgagtagattcaacactcttaggtttatgttgtttgttagctggatcataa |
25986073 |
T |
|
| Q |
208 |
cttgaggtgcttgcacta |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25986074 |
tttgaggtgcttgcacta |
25986091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 6e-72
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 34575923 - 34575733
Alignment:
| Q |
35 |
gtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccagaggaacttactggtggtactaaataatt |
134 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||| |||||||||| |||||||| |||||||| ||| |
|
|
| T |
34575923 |
gtttgtcattctctaacaaaggctttgtaagatcttccaaactgttgctgctctttagtgttcctgcaccagaggaatttactggtagtactaaagaatc |
34575824 |
T |
|
| Q |
135 |
tgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgacctggaccataacttgaggtgcttgcacta |
225 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
34575823 |
tgatgatttactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcacta |
34575733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 2e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 2e-90
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 5197132 - 5196915
Alignment:
| Q |
8 |
atcttcttcctcaaatcaaatatccctgtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccaga |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| | |
|
|
| T |
5197132 |
atcttcttcctcaaatcaaatacccctgtttgtcattctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgttgtaccaaa |
5197033 |
T |
|
| Q |
108 |
ggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgacctggaccataa |
207 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
5197032 |
ggaacttactgatggtactaaagaatctgatggtttactagttggtgcttgagaagattcaacactcttaggtttttgttgtttgttagctggaccataa |
5196933 |
T |
|
| Q |
208 |
cttgaggtgcttgcacta |
225 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5196932 |
cttgaggtgcttgcacta |
5196915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 2e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 2e-90
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 10900927 - 10901144
Alignment:
| Q |
8 |
atcttcttcctcaaatcaaatatccctgtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccaga |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10900927 |
atcttcttcctcaaatcaaatactcctgtttgtcattctctaacaaaggttttgtaagatcttccaaactgttgctactctttagtgttgctgtaccaga |
10901026 |
T |
|
| Q |
108 |
ggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgacctggaccataa |
207 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| | |||||||| ||||||||||||||| ||||| |||||||| | ||||||||||| |
|
|
| T |
10901027 |
ggaacttactggtggtactaaagaatctgatggtttactagttggttcttgagtaaattcaacactcttagatttttattgtttgttagctggaccataa |
10901126 |
T |
|
| Q |
208 |
cttgaggtgcttgcacta |
225 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10901127 |
cttgaggtgcttgcacta |
10901144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 2e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 2e-90
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 9676995 - 9676782
Alignment:
| Q |
8 |
atcttcttcctcaaatcaaatatccctgtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccaga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
9676995 |
atcttcttcctcaaatcaaatatccctgtttttcattctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgttgttccaga |
9676896 |
T |
|
| Q |
108 |
ggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgacctggaccataa |
207 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
9676895 |
ggaacttactggtggtactaaagaatctgatggtttactagttggtgtttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataa |
9676796 |
T |
|
| Q |
208 |
cttgaggtgcttgc |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9676795 |
cttgaggtgcttgc |
9676782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 2e-90
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 31074524 - 31074741
Alignment:
| Q |
8 |
atcttcttcctcaaatcaaatatccctgtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccaga |
107 |
Q |
| |
|
||||||||||||||| |||||| | ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
31074524 |
atcttcttcctcaaaacaaatacctctgtttgtcattctctaacaaaggctttgtaagatcttccaaactgttgctactctttagtgttgctataccaga |
31074623 |
T |
|
| Q |
108 |
ggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgacctggaccataa |
207 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
31074624 |
ggaacttactggtggtactaaagaatctgatggtgtactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataa |
31074723 |
T |
|
| Q |
208 |
cttgaggtgcttgcacta |
225 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31074724 |
cttgaggtgcttgcacta |
31074741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 1e-85
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 35740587 - 35740370
Alignment:
| Q |
8 |
atcttcttcctcaaatcaaatatccctgtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccaga |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||| |||| ||||| |||||||||||||||||| | |
|
|
| T |
35740587 |
atcttcttcctcaaatcaaatacccctgtttgtcattctctaacaaaggctttgtaagatctttcaaactgttactactttttagtgttgctgtaccata |
35740488 |
T |
|
| Q |
108 |
ggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgacctggaccataa |
207 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
35740487 |
ggaacttactggtggtactaaagaatctgatggattactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataa |
35740388 |
T |
|
| Q |
208 |
cttgaggtgcttgcacta |
225 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
35740387 |
cttgaggtgcatgcacta |
35740370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 4e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 4e-88
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 5641054 - 5640837
Alignment:
| Q |
8 |
atcttcttcctcaaatcaaatatccctgtttgycattctctaacaaaggttttgtaagatcttccaaattgttgctactctttagtgttgctgtaccaga |
107 |
Q |
| |
|
|||||||||||||||||||||| || |||||| |||||||||||||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
5641054 |
atcttcttcctcaaatcaaatacccatgtttgtcattctctaacaaaggctttgtaagatcttccaaactcttgctactctttagtgttgttgtaccaga |
5640955 |
T |
|
| Q |
108 |
ggaacttactggtggtactaaataatttgatggtttactagttgatgcttgagtagattcaacactcttaggtttttgttgtttgtgacctggaccataa |
207 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
5640954 |
ggaacttactggtggtactaaagaatctaatggtttactagttggtgcttgagtagattcaacactcttagctttttgttgtttgttagctggaccataa |
5640855 |
T |
|
| Q |
208 |
cttgaggtgcttgcacta |
225 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5640854 |
cttgaggtgcttgcacta |
5640837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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