View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504-Insertion-3 (Length: 578)
Name: NF1504-Insertion-3
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Complemental strand, 39379088 - 39378515
Alignment:
| Q |
8 |
aaatgaccacatgactctct--gtttcttgctccgtgtaaaaggtctaattgnnnnnnntgaaaactcatatgatataattaagttatgcatgattcttc |
105 |
Q |
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| T |
39379088 |
aaatgaccacatgactctctctgtttcttgctctgtgtaaaaggtctaattgaaaagaatgaaaactcatatgatataattaagttatgcatgattcttc |
39378989 |
T |
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| Q |
106 |
attcttggttctaatgttgtctgctattctctttggattactcctgcgcaataattgaagtaaaggacttcaaaaagaaatgtagaattgattatctaaa |
205 |
Q |
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| T |
39378988 |
attcttggttctaatgttgtctgctattctctttggattactcctgcgcaagaattgaagtaaaggacttcaaaaagaaatgtagaattgattatctaaa |
39378889 |
T |
|
| Q |
206 |
aataaaagattagaaacaaacacattgattgtctgagttttcccttttacatgatctgttttgtcataaaagttgaagttaaaataagactgattaaatt |
305 |
Q |
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| T |
39378888 |
aataaaagattagaaacaaacacattgattgtctgagttttcccttttacatgatctgttttgtcataaaagttaaagttaaaataagactgattaaatt |
39378789 |
T |
|
| Q |
306 |
ttacttgtaaactttctagtatatattgtatgttatgcactttacatattgctcactcatctgaaagctaacattagttataacttacaagtccggattg |
405 |
Q |
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| T |
39378788 |
ttacttgtaaactttctagtatatattgtatgttatgcactttacatattgctcactcatctgaaagctaacattagttataacttacaagtccggattg |
39378689 |
T |
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| Q |
406 |
aaaattaatatgaagaacaactgcaacctcttgaaatttacagccaaaactataagacaatgttgattacatagaattgatattagatacatgtaatgca |
505 |
Q |
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| T |
39378688 |
aaaattaatatgaagaacaactgcaacctcttgaaatttacagccaaaactataagacaatgttgattacatagaattgatattagatacatgtaatgca |
39378589 |
T |
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| Q |
506 |
agctaccctaaaaagcatggcttgtcaaaaa-gtgggccagcaatattttctttgaatccccctacatacacag |
578 |
Q |
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| T |
39378588 |
agctaccctaaaaagcatggcttgtcaaaaaggtgggccagcaatattttctttgaatccccctacatacacag |
39378515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 24721580 - 24721438
Alignment:
| Q |
311 |
tgtaaactttctagtatatattgtatgttatgcactttacatattgctcactcatctgaaagctaacattagttataacttacaagtccggattgaaaat |
410 |
Q |
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| T |
24721580 |
tgtaacctttctggtatatagtttatgttatgcacattacatattgctca----tctgaaagctaacattaggtatagcttataagtgcgaattgaaaat |
24721485 |
T |
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| Q |
411 |
taatatgaagaacaactgcaacctcttgaaatttacagccaaaactata |
459 |
Q |
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| T |
24721484 |
tactttgaaaaacagctggaacctcttgaaa--tacagccataactata |
24721438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 24691554 - 24691426
Alignment:
| Q |
86 |
taagttatgcatgattcttcattct---tggttctaatgttgtctgctattctctttggattactcctgcgcaataattgaagt-aaaggacttcaaaaa |
181 |
Q |
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| T |
24691554 |
taagttgtgcatgattcttcattctctgttgttccaaggttgtctgcaattctctttggattactcctgcacaaaaattgaagtgaaagga-ttcagaaa |
24691456 |
T |
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| Q |
182 |
gaaatgtagaattgattatctaaaaataaa |
211 |
Q |
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| T |
24691455 |
gaaatatagaaccgagtatataaaaataaa |
24691426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 537
Target Start/End: Complemental strand, 24730054 - 24729998
Alignment:
| Q |
481 |
attgatattagatacatgtaatgcaagctaccctaaaaagcatggcttgtcaaaaag |
537 |
Q |
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| T |
24730054 |
attgatatgagttacctgtactgcaagcacccctaaaaagcaaggcttgtcaaaaag |
24729998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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