View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504-Insertion-37 (Length: 161)
Name: NF1504-Insertion-37
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-37 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 1e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 38275826 - 38275674
Alignment:
| Q |
7 |
aaaaagtatttacactactagaaactcacgtttttcctgcggaaattattccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaa |
106 |
Q |
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| T |
38275826 |
aaaaattatttacactactagaaactcacgtttttcctgcggaaattattccacaggaattcctgagtattttgctgccatttccttt--ttgaacgaaa |
38275729 |
T |
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| Q |
107 |
tttcctgcagtaatattaccttttaactcttttaatgtaaacaaaactttgttag |
161 |
Q |
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| T |
38275728 |
tttcctgcagtaatattaccttttaactcttttaatgtaaacaaaactttgttag |
38275674 |
T |
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Target: chr6 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 11753688 - 11753599
Alignment:
| Q |
39 |
tttcctgcggaaattattccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaatttcctgcag-taatattacctt |
128 |
Q |
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| T |
11753688 |
tttccagcggaagttattccgcaggaattcctgaggattttgctaccatttcttttac-tgaacgaaatttcctgcagataatatttcctt |
11753599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 11815399 - 11815464
Alignment:
| Q |
45 |
gcggaaattattccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaatttc |
110 |
Q |
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| T |
11815399 |
gcggaaattattccgcaggaattcctgaggattttactgtcatttcttttacttgaacaaaatttc |
11815464 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 32235891 - 32235839
Alignment:
| Q |
64 |
aattcctgagtattttgctgccatttcctttacttgaacgaaatttcctgcag |
116 |
Q |
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| T |
32235891 |
aattcctgaggattttgctgccattttctttactctaacgaaatttcctgcag |
32235839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 3170639 - 3170670
Alignment:
| Q |
18 |
acactactagaaactcacgtttttcctgcgga |
49 |
Q |
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| T |
3170639 |
acactactagaaactctcgtttttcctgcgga |
3170670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 39917142 - 39917081
Alignment:
| Q |
55 |
ttccacaggaattcctgagtattttgctgccatttcctttacttgaacgaaatttcctgcag |
116 |
Q |
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| T |
39917142 |
ttccgcaggaagtcctaaggattttactgtcatttcctttgcttgaacgaaatttcctgcag |
39917081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 21135067 - 21135032
Alignment:
| Q |
15 |
tttacactactagaaactcacgtttttcctgcggaa |
50 |
Q |
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| T |
21135067 |
tttacactactagaaactctcgattttcctgcggaa |
21135032 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 36087050 - 36087009
Alignment:
| Q |
39 |
tttcctgcggaaattattccacaggaattcctgagtattttg |
80 |
Q |
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| T |
36087050 |
tttcctgcggaaattaatccacaggaatgcctgaggattttg |
36087009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 4441633 - 4441594
Alignment:
| Q |
44 |
tgcggaaattattccacaggaattcctgagtattttgctg |
83 |
Q |
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| T |
4441633 |
tgcggaaattattccgcaggaatacctgaggattttgctg |
4441594 |
T |
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