View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504-Insertion-39 (Length: 158)

Name: NF1504-Insertion-39
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504-Insertion-39
NF1504-Insertion-39
[»] chr7 (9 HSPs)
chr7 (8-156)||(46326434-46326582)
chr7 (8-156)||(46322729-46322877)
chr7 (8-156)||(46494686-46494834)
chr7 (18-155)||(46524692-46524829)
chr7 (11-156)||(46479189-46479334)
chr7 (11-154)||(46520619-46520762)
chr7 (19-145)||(46490399-46490525)
chr7 (18-156)||(46532245-46532383)
chr7 (18-155)||(46516985-46517122)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 5e-79; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 46326582 - 46326434
Alignment:
Q  8 ccgagagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46326582 ccgagagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgca 46326483  T
Q  108 ttttgattccattcacttccactgttctatgttctattctttccatctc 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46326482 ttttgattccattcacttccactgttctatgttctattctttccatctc 46326434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 46322877 - 46322729
Alignment:
Q  8 ccgagagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46322877 ccgagagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgca 46322778  T
Q  108 ttttgattccattcacttccactgttctatgttctattctttccatctc 156  Q
    ||||||||||||||||||||||| |||| || ||||||| |||||||||    
T  46322777 ttttgattccattcacttccactcttctgtgctctattccttccatctc 46322729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 46494686 - 46494834
Alignment:
Q  8 ccgagagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  ||||||||||||||||| ||||| |||||||||||||    
T  46494686 ccgagagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttcttttcctttttcagcaatatgca 46494785  T
Q  108 ttttgattccattcacttccactgttctatgttctattctttccatctc 156  Q
    |||||||||||||||||||||||||||| || ||||||| |||||||||    
T  46494786 ttttgattccattcacttccactgttctgtgctctattccttccatctc 46494834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 46524692 - 46524829
Alignment:
Q  18 caatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattttgattcc 117  Q
    |||||||||||||||| || ||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46524692 caatctggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttctttacctttctcagcaatatgcattttgattcc 46524791  T
Q  118 attcacttccactgttctatgttctattctttccatct 155  Q
    ||||||||||||| |||| |||||||||| ||||||||    
T  46524792 attcacttccactcttctgtgttctattccttccatct 46524829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 46479189 - 46479334
Alignment:
Q  11 agagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattt 110  Q
    ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||    
T  46479189 agagcagcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattt 46479288  T
Q  111 tgattccattcacttccactgttctatgttctattctttccatctc 156  Q
    |||| |||||||||||||| ||||| |||||||||| |||||||||    
T  46479289 tgatgccattcacttccaccgttctgtgttctattccttccatctc 46479334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 46520619 - 46520762
Alignment:
Q  11 agagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattt 110  Q
    ||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||    
T  46520619 agagcagcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattt 46520718  T
Q  111 tgattccattcacttccactgttctatgttctattctttccatc 154  Q
    |||| |||||||||||||| ||||| |||||||||| |||||||    
T  46520719 tgatgccattcacttccaccgttctgtgttctattccttccatc 46520762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 46490399 - 46490525
Alignment:
Q  19 aatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattttgattcca 118  Q
    ||||||||||||||| || |||||||||||||| ||||| ||||||||||  ||||| |||||||||||||||||||||||||||||||||||||| |||    
T  46490399 aatctggtggcgccatgaataccagagttcagggaagccatgaaggaacaggacaacgggtccttctttacctttctcagcaatatgcattttgatgcca 46490498  T
Q  119 ttcacttccactgttctatgttctatt 145  Q
    ||||||||||||||||| |||||||||    
T  46490499 ttcacttccactgttctgtgttctatt 46490525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 46532245 - 46532383
Alignment:
Q  18 caatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattttgattcc 117  Q
    |||| ||||||||||| || ||||||||||| || ||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  46532245 caatttggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttcttttcctttttcagcaatatgcattttgattcc 46532344  T
Q  118 attcacttccactgttctatgttctattctttccatctc 156  Q
    |||||| ||||||||||| |||||||||| |||||||||    
T  46532345 attcacctccactgttctgtgttctattccttccatctc 46532383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 46516985 - 46517122
Alignment:
Q  18 caatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattttgattcc 117  Q
    |||||||||||||||| |||||||||| ||||||||| || ||||||||||| || |  ||||||||||| |||||||| || | |||||||||||||||    
T  46516985 caatctggtggcgccatgagtaccagatttcaggaaaaccatgaaggaacaatactattggtccttcttttcctttctctgcgacatgcattttgattcc 46517084  T
Q  118 attcacttccactgttctatgttctattctttccatct 155  Q
    |||||||||||||||||| || |||| || ||||||||    
T  46517085 attcacttccactgttctgtgctctactccttccatct 46517122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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