View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504-Insertion-4 (Length: 519)
Name: NF1504-Insertion-4
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 65 - 519
Target Start/End: Complemental strand, 3121553 - 3121099
Alignment:
| Q |
65 |
aacaaaacttgttactttttattacaatatggctcatttggtttatggtgaaattccatcttttggaaactcacaccatggacaaggtcaacaacttgtt |
164 |
Q |
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| T |
3121553 |
aacaaaacttgttactttttattaaaatatggctcatttggtttatggtgaaactccatcttttggaaactcaacccatggacaaggtcaacaacttgtt |
3121454 |
T |
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| Q |
165 |
ccatttccaaccacttcaacgtccttaaggatccttctcttacatggcaacttagaaatttgcatccaagaggccaaaaaccttcctaacatggacactt |
264 |
Q |
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| T |
3121453 |
ccatttccaaccacttcaacttccttaaggatccttctcttacatggcaacttagaaatttgcatccaagaggccaaaaaccttcctaacatggacactt |
3121354 |
T |
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| Q |
265 |
ttcacaagaacttgggggcaatgctttcaatcctacctaagaaacttggtaacaaaatgaaccaaaccagtgatccatatgtcacagtttctgtggctgg |
364 |
Q |
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| T |
3121353 |
ttcacaagaacttgggggcaatgctttcaatcctacctaagaaacttggtaacaaaatgaaccaaaccagtgatccatatgtcacagtttctgtggctgg |
3121254 |
T |
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| Q |
365 |
tgctgtgattgcaagaacttctgtgatcagaaatgatgagaaccctgtttggatgcaacattttaatgtacctgttgcacaccaagcatcagagattcac |
464 |
Q |
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| T |
3121253 |
tgctgtgattgctagaacttctgtgatcagaaatgatgagaaccctgtttggatgcaacattttaatgtacctgttgcacatcaagcatcagagattcac |
3121154 |
T |
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| Q |
465 |
tttgttgtaaaagacagtgatattgttggttcacagcttattggtgcagttggaa |
519 |
Q |
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| T |
3121153 |
tttgttgtaaaagacagtgatattgttggttcacagcttattggtgcagttggaa |
3121099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 40 - 519
Target Start/End: Complemental strand, 3115740 - 3115243
Alignment:
| Q |
40 |
ctcttaacagttttctacatttctaaacaaaacttgttactttttattacaatatggctcatttggtttatggtgaaattccatcttttggaaactcaca |
139 |
Q |
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| T |
3115740 |
ctctaaacaattttctacatttttaaacaaaacttgttactttttattaaaatatggctcatttggtttatggtgaaactccatcttttggaaactcaca |
3115641 |
T |
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| Q |
140 |
ccatggacaaggtcaacaacttgttccatttccaaccacttcaacgtccttaaggatccttctcttacatggcaacttagaaatttgcatccaagaggcc |
239 |
Q |
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| T |
3115640 |
ccatggacaaggtcaacaacttgttccatttccaaccacttcaacttccttaaggatcttactcttacatggcaacttagaaatatgcgtccaagaagcg |
3115541 |
T |
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| Q |
240 |
aaaaaccttcctaacatggacacttttcacaagaacttgggggcaatgctttcaatcctacctaagaaacttggt---aa---------caaaatg---- |
323 |
Q |
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| T |
3115540 |
aaaaaccttcctaacatggacacttttcacaagaaagtgggggaaatgttttcagtcttacctaaaaaacttggtggcaaaattgaaggcaaaatgtctc |
3115441 |
T |
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| Q |
324 |
--aaccaaaccagtgatccatatgtcacagtttctgtggctggtgctgtgattgcaagaacttctgtgatcagaaatgatgagaaccctgtttggatgca |
421 |
Q |
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| T |
3115440 |
gtaatataaccagtgatccatatgtaactgtttctgtagctggtgctgttattgcaagaacttttgtaattagaaacaatgagaaccctgtttggaatca |
3115341 |
T |
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| Q |
422 |
acattttaatgtacctgttgcacaccaagcatcagagattcactttgttgtaaaagacagtgatattgttggttcacagcttattggtgcagttggaa |
519 |
Q |
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| T |
3115340 |
gcacttcaatgtacctgttgcacatcttgcatcagaaattcactttgttgtaaaagacaatgatattgttggttcacaggttattggtgcagttggaa |
3115243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 3121588 - 3121554
Alignment:
| Q |
8 |
catccatccctcacagtcatctttcaaaaactctc |
42 |
Q |
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| T |
3121588 |
catccatccctcacagtcatctttcaaaaactctc |
3121554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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