View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504-Insertion-42 (Length: 94)

Name: NF1504-Insertion-42
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504-Insertion-42
NF1504-Insertion-42
[»] chr1 (2 HSPs)
chr1 (7-94)||(29318932-29319019)
chr1 (21-92)||(26291629-26291700)
[»] chr5 (2 HSPs)
chr5 (10-92)||(36188615-36188697)
chr5 (21-92)||(26026887-26026958)
[»] chr2 (1 HSPs)
chr2 (10-92)||(32351206-32351288)


Alignment Details
Target: chr1 (Bit Score: 72; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-33
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 29319019 - 29318932
Alignment:
Q  7 attattttcctgcagtttcacgctataatagattgtggccgttcatttgtgatcgtacgtttcagattttaaactcaggttcacacaa 94  Q
    |||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29319019 attattttcctgcagtttcacgttgtaatagattatggccgttcatttgtgatcgtacatttcagattttaaactcaggttcacacaa 29318932  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 26291629 - 26291700
Alignment:
Q  21 gtttcacgctataatagattgtggccgttcatttgtgatcgtacgtttcagattttaaactcaggttcacac 92  Q
    |||||||||| ||||||||  |||||||| ||||||||||||||| | || |||| ||||| ||||||||||    
T  26291629 gtttcacgctgtaatagatcttggccgttgatttgtgatcgtacgatacaaatttcaaacttaggttcacac 26291700  T

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Target: chr5 (Bit Score: 51; Significance: 8e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-21
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 36188697 - 36188615
Alignment:
Q  10 attttcctgcagtttcacgctataatagattgtggccgttcatttgtgatcgtacgtttcagattttaaactcaggttcacac 92  Q
    |||||||||| |||||||| | |||||||| ||||||||| ||||||||||||||| ||||||||| |||||||| |||||||    
T  36188697 attttcctgctgtttcacgttgtaatagatcgtggccgttgatttgtgatcgtacggttcagatttcaaactcagattcacac 36188615  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 26026887 - 26026958
Alignment:
Q  21 gtttcacgctataatagattgtggccgttcatttgtgatcgtacgtttcagattttaaactcaggttcacac 92  Q
    |||| ||||| |||||||| |||||| || ||||||||||||||  |||| |||| ||| ||||||||||||    
T  26026887 gttttacgctgtaatagatcgtggcctttgatttgtgatcgtacagttcaaatttcaaaatcaggttcacac 26026958  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 32351206 - 32351288
Alignment:
Q  10 attttcctgcagtttcacgctataatagattgtggccgttcatttgtgatcgtacgtttcagattttaaactcaggttcacac 92  Q
    |||| ||||| |||||||  | ||||||||||||| |||| ||||||||||||||  | || |||| ||||||||||||||||    
T  32351206 atttccctgctgtttcacattgtaatagattgtggtcgttgatttgtgatcgtacagtacaaatttcaaactcaggttcacac 32351288  T

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