View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504-Insertion-45 (Length: 77)

Name: NF1504-Insertion-45
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504-Insertion-45
NF1504-Insertion-45
[»] chr2 (3 HSPs)
chr2 (8-77)||(40610470-40610539)
chr2 (8-77)||(40627676-40627745)
chr2 (8-77)||(40616965-40617034)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-32
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 40610470 - 40610539
Alignment:
Q  8 gtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40610470 gtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaa 40610539  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 40627676 - 40627745
Alignment:
Q  8 gtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaa 77  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||    
T  40627676 gtaactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccacaa 40627745  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 40616965 - 40617034
Alignment:
Q  8 gtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaa 77  Q
    ||||||||||| ||||||||||   |||| | || |||| ||| |||||||||| |||||||||||||||    
T  40616965 gtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaa 40617034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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