View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504-Insertion-47 (Length: 60)

Name: NF1504-Insertion-47
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504-Insertion-47
NF1504-Insertion-47
[»] chr6 (5 HSPs)
chr6 (8-60)||(31520604-31520656)
chr6 (8-58)||(17308652-17308702)
chr6 (8-60)||(4448556-4448608)
chr6 (8-60)||(4968966-4969018)
chr6 (8-60)||(13508232-13508284)
[»] chr1 (4 HSPs)
chr1 (8-60)||(2398925-2398977)
chr1 (8-60)||(20338275-20338327)
chr1 (8-60)||(49326887-49326939)
chr1 (8-60)||(34677985-34678037)
[»] scaffold0878 (1 HSPs)
scaffold0878 (8-60)||(1139-1191)
[»] scaffold0260 (1 HSPs)
scaffold0260 (8-60)||(598-650)
[»] chr7 (6 HSPs)
chr7 (8-60)||(7916856-7916908)
chr7 (8-60)||(26173008-26173060)
chr7 (8-60)||(7305412-7305463)
chr7 (8-60)||(19763731-19763782)
chr7 (8-60)||(38705264-38705316)
chr7 (8-58)||(21780374-21780424)
[»] chr4 (3 HSPs)
chr4 (8-60)||(38972720-38972772)
chr4 (8-60)||(5323256-5323308)
chr4 (8-60)||(16923771-16923822)
[»] chr3 (4 HSPs)
chr3 (8-60)||(32926994-32927046)
chr3 (8-60)||(20857074-20857126)
chr3 (8-40)||(6306522-6306554)
chr3 (8-60)||(33908197-33908248)
[»] chr2 (5 HSPs)
chr2 (8-60)||(11881525-11881577)
chr2 (8-60)||(37392579-37392631)
chr2 (8-60)||(40654894-40654945)
chr2 (8-60)||(4968351-4968402)
chr2 (8-60)||(35593922-35593973)
[»] chr8 (2 HSPs)
chr8 (8-60)||(35630544-35630596)
chr8 (8-60)||(11721970-11722021)
[»] chr5 (1 HSPs)
chr5 (8-60)||(33891244-33891296)


Alignment Details
Target: chr6 (Bit Score: 49; Significance: 7e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-20
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 31520604 - 31520656
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31520604 gtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagtga 31520656  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 17308702 - 17308652
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagt 58  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17308702 gtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagt 17308652  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 4448608 - 4448556
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||    
T  4448608 gtttttggattgcattggagatcttctagtgtaaagcttcaacaagttagtga 4448556  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 4968966 - 4969018
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||| ||||||| ||||||||||  |||||||||||||||||||||||||||    
T  4968966 gttttcggattgcattgcagatcttttattgtaaagcttcaacaagttagtga 4969018  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 13508232 - 13508284
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||    
T  13508232 gtttttggattgcattggagatcttctagtgtaaagcttcaacaagttagtga 13508284  T

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Target: chr1 (Bit Score: 49; Significance: 7e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-20
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 2398977 - 2398925
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2398977 gtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagtga 2398925  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 20338327 - 20338275
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  20338327 gtttttggattgcattgcagatcttctattgtaaagcttcaacaagttagtga 20338275  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 49326939 - 49326887
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  49326939 gtttttggattgcattgcagatcttatattgtaaagcttcaacaagttagtga 49326887  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 34678037 - 34677985
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||| ||||| |||||||| | ||||||||||||||||||||||||||||    
T  34678037 gtttttgaattgcattgcagatgttctattgtaaagcttcaacaagttagtga 34677985  T

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Target: scaffold0878 (Bit Score: 45; Significance: 2e-17; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 1191 - 1139
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  1191 gtttttggattgcattgcagatctgctagtgtaaagcttcaacaagttagtga 1139  T

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Target: scaffold0260 (Bit Score: 45; Significance: 2e-17; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 650 - 598
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  650 gtttttggattgcattgcagatcttctattgtaaagcttcaacaagttagtga 598  T

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Target: chr7 (Bit Score: 45; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 7916856 - 7916908
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  7916856 gtttttggattgcattgcagatctgctattgtaaagcttcaataagttagtga 7916908  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 26173008 - 26173060
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  26173008 gtttttggattgcattgcagatctgctattgtaaagcttcaacaagtttgtga 26173060  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 7305463 - 7305412
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  7305463 gtttttggattgcattgcagattt-ctattgtaaagcttcaacaagttagtga 7305412  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 19763782 - 19763731
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  19763782 gtttttggattgcattgcagattt-ctattgtaaagcttcaacaagttagtga 19763731  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 38705316 - 38705264
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||    
T  38705316 gtttttggattgcattggagatcttctagtgtaaagcttcaacaagttagtga 38705264  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 21780424 - 21780374
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagt 58  Q
    ||||||||||||| |||||||| |  | |||||||||||||||||||||||    
T  21780424 gtttttggattgcattgcagatatttttttgtaaagcttcaacaagttagt 21780374  T

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Target: chr4 (Bit Score: 45; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 38972772 - 38972720
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  38972772 gtttttggattgcattgcagatcttctattgtaaagcttcaacaagttagtga 38972720  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 5323256 - 5323308
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| || ||||||| ||||||||||||||||||||||||||||    
T  5323256 gtttttggattgcattacagatctactattgtaaagcttcaacaagttagtga 5323308  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 16923822 - 16923771
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  16923822 gtttttggattgcattgcagattt-ctattgtaaagcttcaacaagttagtga 16923771  T

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Target: chr3 (Bit Score: 45; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 32926994 - 32927046
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  32926994 gtttttggattgcattgcagatctactattgtaaagcttcaacaagttagtga 32927046  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 20857074 - 20857126
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| || |||||||||||||||||||||||||||| |||||||    
T  20857074 gtttttggattgcattacagatctgctattgtaaagcttcaacaaattagtga 20857126  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 6306522 - 6306554
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgta 40  Q
    ||||||||||||| |||||||||||||||||||    
T  6306522 gtttttggattgcattgcagatctgctattgta 6306554  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 33908248 - 33908197
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||| | |||||| |||||||||||| ||||||||    
T  33908248 gtttttggattgcattgcagattt-ctattggaaagcttcaacatgttagtga 33908197  T

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Target: chr2 (Bit Score: 45; Significance: 2e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 11881577 - 11881525
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  11881577 gtttttggattgcattgcagatcttctattgtaaagcttcaacaagttagtga 11881525  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 37392631 - 37392579
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  37392631 gtttttggattgcattgcagatcttctattgtaaagcttcaacaagttagtga 37392579  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 40654894 - 40654945
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  40654894 gtttttggattgcattgcagattt-ctattgtaaagcttcaacaagttagtga 40654945  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 4968402 - 4968351
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||| | |||||| |||||||||||| ||||||||    
T  4968402 gtttttggattgcattgcagattt-ctattggaaagcttcaacatgttagtga 4968351  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 35593922 - 35593973
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||| | |||||| |||||||||||| ||||||||    
T  35593922 gtttttggattgcattgcagattt-ctattggaaagcttcaacatgttagtga 35593973  T

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Target: chr8 (Bit Score: 41; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 35630596 - 35630544
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| |||||||    
T  35630596 gtttttggattgcattgcagatctactattgtaaagcttcaacaaattagtga 35630544  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 11722021 - 11721970
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  11722021 gtttttggattgcattgcagattt-ctattgtaaagcttcaacaagttagtga 11721970  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 33891296 - 33891244
Alignment:
Q  8 gtttttggattgcgttgcagatctgctattgtaaagcttcaacaagttagtga 60  Q
    ||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||    
T  33891296 gtttttggattgcattggagatcttctagtgtaaagcttcaacaagttagtga 33891244  T

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