View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504-Insertion-5 (Length: 405)
Name: NF1504-Insertion-5
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-5 |
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| [»] scaffold0053 (2 HSPs) |
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| [»] scaffold0239 (1 HSPs) |
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Alignment Details
Target: scaffold0053 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 74491 - 74094
Alignment:
| Q |
8 |
gtttgaattatgtaatgtttgtaaagtagatgaaaattatagatgcaaataaattttatactgtgtgtatttagaactcacatatgtttttaaactgata |
107 |
Q |
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| T |
74491 |
gtttgaattatgtaatgtttgtaaagtagatgaaaattatagatgcaaataaattttgtattgtgtgtatttagaaatcacatatggttttaaactgata |
74392 |
T |
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| Q |
108 |
ttacagctaccttaagaattttgattttgcacgaaatgcagacaaatatgattaatgcatccataattgtgatgatacgctaatttccttgcatttagtt |
207 |
Q |
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| T |
74391 |
ttgcagttaccttaagaattttgattttgcacaaaatgcagacaaatatgattgatgcatccataattgtgatgatacgctaatttccttgcatttagtt |
74292 |
T |
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| Q |
208 |
gttagattctcaattttgtttatggacttgtcaattgtaatgatctatacccacttggcatatgatcagaaagattacgaaattcattgaaagtttcata |
307 |
Q |
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| T |
74291 |
gttagattctcaattttgtttatggacttgtcaattgtaatgatctatacccacttggcatatgatcagaaagattacgaaattcattggaagtttcata |
74192 |
T |
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| Q |
308 |
aatccaacaaattgaagaatattgaacctagtttctttttcatttgttggttactcgaaacaccaattcaatgatctttactttaaaacttgtaatga |
405 |
Q |
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| T |
74191 |
aatccaacaaattgaagaatattgaacctagtttctttttcatttgttggttactcgaaacaccaattcaatgatctttactttgaaacttgtaatga |
74094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 242 - 398
Target Start/End: Complemental strand, 74102 - 73946
Alignment:
| Q |
242 |
ttgtaatgatctatacccacttggcatatgatcagaaagattacgaaattcattgaaagtttcataaatccaacaaattgaagaatattgaacctagttt |
341 |
Q |
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| T |
74102 |
ttgtaatgatctatttccacttggcatatgatccgaaagattacgaaattcattaaaagtttcataaatccaacaaattgaagaatattgaaccaagttt |
74003 |
T |
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| Q |
342 |
ctttttcatttgttggttactcgaaacaccaattcaatgatctttactttaaaactt |
398 |
Q |
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| T |
74002 |
attttttatttgttggttactcgaaacaccaattcgatgatctttaatttaaaactt |
73946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0239 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: scaffold0239
Description:
Target: scaffold0239; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 2736 - 2346
Alignment:
| Q |
8 |
gtttgaattatgtaatgtttgtaaagtagatgaaaattatagatgcaaataaattttatactgtgtgtatttagaactcacatatgtttttaaactgata |
107 |
Q |
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| T |
2736 |
gtttgaattatgtaatgtttgtaaagtagatgaaaattatagaagcaaataaattttgtattgtgtgtatttagaaatcgcatatggttttaaactgata |
2637 |
T |
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| Q |
108 |
ttacagctaccttaagaattttgattttgcacgaaatgcagacaaatatgattaatgcatccataattgtgatgatacgctaatttccttgcatttagtt |
207 |
Q |
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| T |
2636 |
ttgcagttaccttaagaattttgattttgcacaaaatgcagaaaaatatgattgatgcattcataattgtgatgatacgctaatttccttgcatttagtt |
2537 |
T |
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| Q |
208 |
gttagattctcaattttgtttatggacttgtcaattgtaatgatctatacccacttggcatatgatcagaaagattacgaaattcattgaaagtttcata |
307 |
Q |
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| T |
2536 |
gttagattctcaattttgtttatggacttgtcaattgtaatgatctatacccacttggcatatgatcagaaagattacgaaattcattgaaagtttcatg |
2437 |
T |
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| Q |
308 |
aatccaacaaattgaagaatattgaacctagtttctttttcatttgttggttactcgaaacaccaattcaatgatctttactttaaaactt |
398 |
Q |
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| T |
2436 |
aatccaacaaattgaagaatattgaaccaagtttcttttttatttgttggttactcgaaacaccaattagatgatctttaatttaaaactt |
2346 |
T |
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