View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504-Insertion-7 (Length: 552)
Name: NF1504-Insertion-7
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-7 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 233 - 552
Target Start/End: Original strand, 47265752 - 47266071
Alignment:
| Q |
233 |
aaatatttgattgagattcgatgtttttgtgcttagatggagacaaagagaagaccaatgaaggattacatggatatagttcagagagacattgatccaa |
332 |
Q |
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| T |
47265752 |
aaatatttgatcgagattcgatgtttttgtacttagatggagacaaagagaagaccaatgaaggattacatggatatagttcagagagacattgatccaa |
47265851 |
T |
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| Q |
333 |
aaatgagaggaatattgattgattggttagtagaagttgttgaagaatgcaagcttcaaaacgatacacttcatcgcgctgtttcatacatagataggtt |
432 |
Q |
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| T |
47265852 |
aaatgagaggaatattgattgattggttagtagaagttgttgaagaatacaagcttcaaaacgatacacttcatcgcgctgtttcatacatagataggtt |
47265951 |
T |
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| Q |
433 |
cctatcttattaccctatctgtagggtcaagcttcgattgctgggtgtttcatccatgtacattgcatcgtaagccttctatacccgctttgaattttgt |
532 |
Q |
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| T |
47265952 |
cctatcttattaccctatctgtagggtcaagcttcaattgctgggtgtttcatccatgtacattgcatcgtaagccttctatacccgctttgaattttgt |
47266051 |
T |
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| Q |
533 |
gaatgatttttctttttatt |
552 |
Q |
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| T |
47266052 |
gaatgatttttctttttatt |
47266071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 47265489 - 47265704
Alignment:
| Q |
9 |
aaacgtgtcgtgttgggtgaacttcccaattcaacaaccaatctcactgttcctcaaactctgccaactgcgtccgataagaccaatagcattggtgaag |
108 |
Q |
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| T |
47265489 |
aaacgtgtcgtgttgggtgaacttcccaattcaacaaccaatctcactgttcctcaaactctgccaactgcgtccgagaagaccaatagcattggtgaag |
47265588 |
T |
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| Q |
109 |
aatcaactacccatgaaaagtttgatgctcctgttgtttccagtgcttataactatcttcgatccatcgaggtaatcttatgggtctttacacactattt |
208 |
Q |
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| T |
47265589 |
aatcaactacccatgaaaagtttgatgctcctgttgtttccagtgcttataactatcttcgatccatcgaggtaatcttatgggtctttacacactattt |
47265688 |
T |
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| Q |
209 |
caaaattgtatatata |
224 |
Q |
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| T |
47265689 |
caaaattgtatatata |
47265704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 264 - 512
Target Start/End: Original strand, 47258414 - 47258662
Alignment:
| Q |
264 |
cttagatggagacaaagagaagaccaatgaaggattacatggatatagttcagagagacattgatccaaaaatgagaggaatattgattgattggttagt |
363 |
Q |
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| T |
47258414 |
cttagttggaggaaaagagaagaccaatgaaggattacatggagatacttcagagatacattactccagaattgagaggaaaattggtggattggttagt |
47258513 |
T |
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| Q |
364 |
agaagttgttgaagaatgcaagcttcaaaacgatacacttcatcgcgctgtttcatacatagataggttcctatcttattaccctatctgtagggtcaag |
463 |
Q |
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| T |
47258514 |
agaagttgctgaagaatacaagcttcataatgatacacttcatcttgctgtatcatacatagatatattcctatcttctcaccctatcagaaggatcaac |
47258613 |
T |
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| Q |
464 |
cttcgattgctgggtgtttcatccatgtacattgcatcgtaagccttct |
512 |
Q |
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| T |
47258614 |
cttgaattgttgggtgtttcatccttctacattgcatcgtaagccttct |
47258662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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