View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504-Insertion-8 (Length: 451)
Name: NF1504-Insertion-8
Description: NF1504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504-Insertion-8 |
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| [»] scaffold0712 (1 HSPs) |
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| [»] scaffold0709 (1 HSPs) |
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Alignment Details
Target: scaffold0712 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0712
Description:
Target: scaffold0712; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 2349 - 2140
Alignment:
| Q |
8 |
ctttgatctcgaaaatttatcttcttgcattactctacttcatctcttgaaaccgtgcaaaccgtccgaccaaaccggcatccgaataacccgtcacccg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2349 |
ctttgatctcgaaaatttatcttcttgcattactctacttcatctcttgaaaccgtgcaaaccgtcctaccaaaccggcatccgaataacccgtcacccg |
2250 |
T |
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| Q |
108 |
aactaaccgttgaagcaaacggacggcggtgggtttcatttttccacccgcggtggtcactcggatttgcattttccaaccgaaatccgaccgaaccgtc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2249 |
aactaaccgttgaagcaaacggacggcggtgggtttcatttttccacccgcggtggtcactcggatttgcattttccaaccgaaatccgaccgaaccgtc |
2150 |
T |
|
| Q |
208 |
cgattgtcca |
217 |
Q |
| |
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|||||||||| |
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| T |
2149 |
cgattgtcca |
2140 |
T |
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Back To:
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Target: scaffold0709 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0709
Description:
Target: scaffold0709; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 2369 - 2160
Alignment:
| Q |
8 |
ctttgatctcgaaaatttatcttcttgcattactctacttcatctcttgaaaccgtgcaaaccgtccgaccaaaccggcatccgaataacccgtcacccg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2369 |
ctttgatctcgaaaatttatcttcttgcattactctacttcatctcttgaaaccgtgcaaaccgtcctaccaaaccggcatccgaataacccgtcacccg |
2270 |
T |
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| Q |
108 |
aactaaccgttgaagcaaacggacggcggtgggtttcatttttccacccgcggtggtcactcggatttgcattttccaaccgaaatccgaccgaaccgtc |
207 |
Q |
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| T |
2269 |
aactaaccgttgaagcaaacggacggcggtgggtttcatttttccacccgcggtggtcactcggatttgcattttccaaccgaaatccgaccgaaccgtc |
2170 |
T |
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| Q |
208 |
cgattgtcca |
217 |
Q |
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|||||||||| |
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| T |
2169 |
cgattgtcca |
2160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 36692987 - 36692778
Alignment:
| Q |
8 |
ctttgatctcgaaaatttatcttcttgcattactctacttcatctcttgaaaccgtgcaaaccgtccgaccaaaccggcatccgaataacccgtcacccg |
107 |
Q |
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|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36692987 |
ctttgatctcgaaaatttatcttcttgcattattatccttcatctcttgaaaccgtgcaaaccgtccgaccaaaccggcatccgaataacccgtcacccg |
36692888 |
T |
|
| Q |
108 |
aactaaccgttgaagcaaacggacggcggtgggtttcatttttccacccgcggtggtcactcggatttgcattttccaaccgaaatccgaccgaaccgtc |
207 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
36692887 |
aactaaccgttgaaccaaatggacggcggtgggtttcatttttccacccgcggtggtcactcggatttgcatttttcaaccgaaatccaaccgaaccgtc |
36692788 |
T |
|
| Q |
208 |
cgattgtcca |
217 |
Q |
| |
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|||||||||| |
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| T |
36692787 |
cgattgtcca |
36692778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 10027441 - 10027291
Alignment:
| Q |
8 |
ctttgatctcgaaaatttatcttcttgcattactctacttcatctcttgaaaccgtgcaaaccgtccgaccaaaccggcatccgaataacccgtcacccg |
107 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10027441 |
ctttgatctcgaaaatttatcttcttgcattactctacttcatctcttgaaaccgtgcaaaccgtccaaccaaaccggcatccgaataacccgtcacccg |
10027342 |
T |
|
| Q |
108 |
aactaaccgttgaagcaaacggacggcggtgggtttcatttttccacccgc |
158 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10027341 |
aactaaccgttgaagcaaacggacggcggtgggtttcatttttccacccgc |
10027291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 223 - 411
Target Start/End: Complemental strand, 29654271 - 29654082
Alignment:
| Q |
223 |
tgtcaatcatatggcatgtccaagcagacattagtgnnnnnnnntgttatctagattta-tcgcgctccgtcgttcttcgatttcaatcctcacaacaag |
321 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29654271 |
tgtcaatcatatggcatatccaagcagacattagtgaaaaaaaatgttatctagattttctcgcgctccgtcgttcttcgatttcaatcctcacaacaag |
29654172 |
T |
|
| Q |
322 |
attctcttccgccgcctcagctcaattcgttattgggcaccaactctctcatctctctatcattgtaagttatcttttttattgcaaaag |
411 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29654171 |
attctcttccgccgcttcagctcaattcgttattgggcaccaactctctcatctctctatcattgtaagttatcttttttattgcaaaag |
29654082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 20968351 - 20968405
Alignment:
| Q |
163 |
gtcactcggatttgcattttccaaccgaaatccgaccgaaccgtccgattgtcca |
217 |
Q |
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|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |
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| T |
20968351 |
gtcactcggatttggatttttcaaccaaaatccgaccgaaccgtccgattgtcca |
20968405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 22472615 - 22472675
Alignment:
| Q |
79 |
aaaccggcatccgaataacccgtcacccgaactaaccgttgaagcaaacggacggcggtgg |
139 |
Q |
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|||||| || ||||| |||||| |||||| ||||||||||||| |||||||||| ||||| |
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| T |
22472615 |
aaaccgtcacccgaagaacccgcaacccgatctaaccgttgaagaaaacggacggtggtgg |
22472675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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