View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15040_high_13 (Length: 439)
Name: NF15040_high_13
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 37833270 - 37832842
Alignment:
| Q |
1 |
ggatggtgttttttgttgtcgtactc----acacaaagctggcagggttcatttctatgtaacatgttctaataggttagcatgtagtgaagtgcacgaa |
96 |
Q |
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|||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37833270 |
ggatggtgttttttgttgtcgtactcctccacacaaggttggcagggttcatttctatgtaacatgttctaataggttagcatgtagtgaagtgcatgaa |
37833171 |
T |
|
| Q |
97 |
ttcgatttccgagtcaatacttctcaagaaatcaacactgcgggagagaacagaagtcgctttcaatacttttaataaataatttaaagaattgttatcc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37833170 |
ttcgatttccgagtcaatacttctcaagaaatcaacactgcgggatagaacagaagtcactttcaatacttttaataaataatttaaagaattgttatcc |
37833071 |
T |
|
| Q |
197 |
ctggagtatgacttcccacatagtttagattcaattagtggtaatgagaaatctcaaataagaagtaaaagcagttgtttgctcatgagggacgatgaca |
296 |
Q |
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| T |
37833070 |
ctggagtatgacttcccacatagtttagattcaattagtggtaatgagaaatctcaaataagaagtaaaagcagttgtttgctcatgagggacgatgaca |
37832971 |
T |
|
| Q |
297 |
aatgggacaaactactgaaatttactctagagatttattttgttgttagtttcgtttaagacattgagctagttcttatgcttaataattcaccctagtc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37832970 |
aatgggacaaactactgaaatttactctagagatttattttgttgttagtttcgtttaagacattgagctagttcttatgcttaataattcaccctagtc |
37832871 |
T |
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| Q |
397 |
ctagcataagatttttgcttgtttatttt |
425 |
Q |
| |
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| T |
37832870 |
ctagcataagatttttgcttgtttatttt |
37832842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 327
Target Start/End: Complemental strand, 37841759 - 37841454
Alignment:
| Q |
27 |
acacaaagctggcagggttcatttctatgtaacatgttctaataggttagcatgtagtgaagtgcacgaattcgatttccgagtcaatacttctcaagaa |
126 |
Q |
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|||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| |
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| T |
37841759 |
acacaaggctggaagggttcctttctatgtaacatgttctaataggttagcatgtagtgaagtgcgcgaattcgatttccgagtcaattatactcaagaa |
37841660 |
T |
|
| Q |
127 |
atcaacactgcgggagagaacagaagtcg-----ctttcaatacttttaataaataatttaaagaattgttatccctggagtatgacttcccacatagtt |
221 |
Q |
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||||||||| || |||| |||||| | ||| ||||||||||||| |||| |||||| || |||| ||| |||||||||| | || |
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| T |
37841659 |
gacaacactgccggtgagaccagaagcaggaatacttatgatacttttaataagagatttggagaatttttgtcccaagagcatgacttccctcgagttt |
37841560 |
T |
|
| Q |
222 |
tagattcaattagtggtaatgagaaatctcaaataagaagtaaaagcagttgtttgctcatgagggacgatgacaaatgggacaaactactgaaatttac |
321 |
Q |
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||||||||||||||| ||||||||||||||| | |||||||||| ||| |||||| ||| | || || ||||||| |||||||||||||||| |
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| T |
37841559 |
tagattcaattagtgtgaatgagaaatctcaactgagaagtaaaattggttctttgcttggtaggaaggacgatgaatgggatgaactactgaaatttac |
37841460 |
T |
|
| Q |
322 |
tctaga |
327 |
Q |
| |
|
|||||| |
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|
| T |
37841459 |
tctaga |
37841454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 1655620 - 1655677
Alignment:
| Q |
48 |
tttctatgtaacatgttctaataggttagcatgtagtgaagtgcacgaattcgatttc |
105 |
Q |
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|||||||||||||||| | ||||||||||| || |||||||||| ||||| |||||| |
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|
| T |
1655620 |
tttctatgtaacatgtgccaataggttagcttgcagtgaagtgcgtgaatttgatttc |
1655677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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