View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15040_high_15 (Length: 422)

Name: NF15040_high_15

Description: NF15040

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15040_high_15

[»] chr6 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 83; E-Value: 3e-39

Query Start/End: Original strand, 7 - 197

Target Start/End: Complemental strand, 31654256 - 31654066

Alignment:

Q	7	taggtgactaccaatttcggtcttcgccctgctttcttccgttcgatttggtttcgctttgccagaaaaacttcacctttacacatagagttaatcgacg	106	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	31654256	taggtgaataccaatttcggtttttgctatgctttctaccgttcgatttggtttcgccttggcagaaaatctgcatttttacacataaagttaatcgaca	31654157	T

Q	107	caccgcaaagattcacagttgctagagttttcgaacaagttctcacgaaaatctaagaaagtatatcagttggaattttcgagccaccatt	197	Q
		\|\|\| \|\| \|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\| \|\|\|\|\|
T	31654156	aaccacatagttccatagttgctagagttttcgaacaagttctcgcgaaaatctcagaaagtatctcagttgaaaattccgagccgccatt	31654066	T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 54; E-Value: 7e-22

Query Start/End: Original strand, 244 - 336

Target Start/End: Original strand, 7034234 - 7034326

Alignment:

Q	244	ttatacagagcatatttaagtgactatgaaatagctactaataaaagttccttcacataagga-attgtacaatacattgaagtcggatcctgc	336	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	7034234	ttatacagagcatatttaagtgactatgaaataactac-aataaaagttccttcacataaagagaatgtgcaatacattgaagctggatcctgc	7034326	T

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