View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15040_high_16 (Length: 419)
Name: NF15040_high_16
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_high_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 410
Target Start/End: Complemental strand, 6187447 - 6187052
Alignment:
| Q |
15 |
aaaaccaacattgagtttggtatcaaaagtgatgatactaatgattttgaagatattgcaattaggaaacaagtgtttggttccaacacttacaaaaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6187447 |
aaaaccaacattgagtttggtatcaaaagtgatgatactaatgattttgaagatattgcaattaggaaacaagtgtttggttccaacacttacaaaaaac |
6187348 |
T |
|
| Q |
115 |
caccttctaagagtttcattcattttgttattgaagcttttaaggatgttacaattctaatccttttggtttgtgctacactttcacttggctttggtat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6187347 |
caccttctaagagtttcattcattttgttattgaagcttttaaggatgttacaattctaatccttttggtttgtgctacactttcacttggctttggtat |
6187248 |
T |
|
| Q |
215 |
caagcaacatggaatcaaagaaggttggtatgatggtggtagcattttcctagctgttttcatcgttatttcgatgtcatcaataagcaacttcaaacaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6187247 |
caagcaacatggaatcaaagaaggttggtatgatggtggtagcattttcctagctgttttcatcgttatttcgatgtcatcaataagcaacttcaaacaa |
6187148 |
T |
|
| Q |
315 |
aacaaacaatttgataaattgtctcaagttagcaatgacattcaaattgatttggttcgaagtggtcgtcggctaaaggtatctatatttgatatt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6187147 |
aacaaacaatttgataaattgtctcaagttagcaatgacattcaaattgatttggttcgaagtggtcgtcggctaaaggtatctatatttgatatt |
6187052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 410
Target Start/End: Complemental strand, 4244388 - 4243996
Alignment:
| Q |
15 |
aaaaccaacattgagtttggtatcaaaagtgatgatactaatgattttgaagatattgcaattaggaaacaagtgtttggttccaacacttacaaaaaac |
114 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||| |||||||| | || ||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4244388 |
aaaaccaacgttgagtttggtatcagaagtcatgatg---atgattttcatgacatttcaattagacaacaagtgtttggttccaacacttacaaaaaac |
4244292 |
T |
|
| Q |
115 |
caccttctaagagtttcattcattttgttattgaagcttttaaggatgttacaattctaatccttttggtttgtgctacactttcacttggctttggtat |
214 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
4244291 |
caccttctaaaagtttctttcattttgttgttgaagcttttaaggatgtaacaattcttattcttttggtttgtgctactctttcacttggctttggaat |
4244192 |
T |
|
| Q |
215 |
caagcaacatggaatcaaagaaggttggtatgatggtggtagcattttcctagctgttttcatcgttatttcgatgtcatcaataagcaacttcaaacaa |
314 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
4244191 |
caaggaacatggaatcaaagaaggttggtatgatggtggcagcatttttctagctgttttcattgttatttcaatgtctgcaataagcaactttaaacaa |
4244092 |
T |
|
| Q |
315 |
aacaaacaatttgataaattgtctcaagttagcaatgacattcaaattgatttggttcgaagtggtcgtcggctaaaggtatctatatttgatatt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| || || | ||||||||| ||||| |||||| |
|
|
| T |
4244091 |
aacaaacaatttgataaattgtctcaagtgagcaatgatattcaaattgatttggttcgtagtgggcgccgacaaaaggtatcaatattcgatatt |
4243996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University