View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15040_high_19 (Length: 334)

Name: NF15040_high_19
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15040_high_19
NF15040_high_19
[»] chr8 (6 HSPs)
chr8 (2-152)||(35842010-35842157)
chr8 (222-292)||(35842227-35842297)
chr8 (2-56)||(33220024-33220077)
chr8 (28-57)||(23559033-23559062)
chr8 (11-55)||(9384617-9384661)
chr8 (24-56)||(9418810-9418842)
[»] chr3 (1 HSPs)
chr3 (10-59)||(44833467-44833516)
[»] chr6 (1 HSPs)
chr6 (10-58)||(23608425-23608473)
[»] chr1 (2 HSPs)
chr1 (10-56)||(11821160-11821206)
chr1 (2-58)||(45688306-45688362)
[»] chr7 (1 HSPs)
chr7 (10-59)||(5060845-5060894)
[»] chr2 (1 HSPs)
chr2 (2-55)||(12969288-12969340)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 35842010 - 35842157
Alignment:
Q  2 ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaattcttagtcagattagagccagagt-gtgctttccgtgtgtggtgctg 100  Q
    |||| |||||||||||||||||||  |||||| ||||||||||| | ||||||    ||| ||||||||||| |||| ||||||||| ||||||||||||    
T  35842010 ttttaaatttttattttggaactgctcggaactatttggataataatcagaat----agttagattagagccggagttgtgctttccatgtgtggtgctg 35842105  T
Q  101 catgcaactcttgggctcaactcttgagatttgctgccttactgggctgacc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35842106 catgcaactcttgggctcaactcttgagatttgctgccttactgggctgacc 35842157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 35842227 - 35842297
Alignment:
Q  222 atgacacttactttttccaccttatttgatttcttgtgcgccctatgcagttcatattatataatttagct 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35842227 atgacacttactttttccaccttatttgatttcttgtgcgccctatgcagttcatattatataatttagct 35842297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 33220077 - 33220024
Alignment:
Q  2 ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaattc 56  Q
    |||||||  |||| ||||||| ||| |||||||||||||||||||||||||||||    
T  33220077 ttttgaacatttactttggaa-tgagcggaaccatttggataatgagcagaattc 33220024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 23559033 - 23559062
Alignment:
Q  28 cggaaccatttggataatgagcagaattct 57  Q
    ||||||||||||||||||||||||||||||    
T  23559033 cggaaccatttggataatgagcagaattct 23559062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 9384661 - 9384617
Alignment:
Q  11 tttattttggaactgaacggaaccatttggataatgagcagaatt 55  Q
    ||||||||| || ||| |||||||||||| |||||||||||||||    
T  9384661 tttattttgaaaatgagcggaaccatttgaataatgagcagaatt 9384617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 9418810 - 9418842
Alignment:
Q  24 tgaacggaaccatttggataatgagcagaattc 56  Q
    |||||||||||||||||||||||| ||||||||    
T  9418810 tgaacggaaccatttggataatgaacagaattc 9418842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 44833516 - 44833467
Alignment:
Q  10 ttttattttggaactgaacggaaccatttggataatgagcagaattctta 59  Q
    ||||| ||||||| | ||||||||||||||| ||||||||||||||||||    
T  44833516 ttttactttggaaataaacggaaccatttgggtaatgagcagaattctta 44833467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 23608473 - 23608425
Alignment:
Q  10 ttttattttggaactgaacggaaccatttggataatgagcagaattctt 58  Q
    ||||||||||| | ||||||||| |||||| ||||||||||||||||||    
T  23608473 ttttattttgggaatgaacggaatcatttgaataatgagcagaattctt 23608425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 11821206 - 11821160
Alignment:
Q  10 ttttattttggaactgaacggaaccatttggataatgagcagaattc 56  Q
    ||||| ||||| | |||||| ||||||||||||||||||||||||||    
T  11821206 ttttactttgggaatgaacgaaaccatttggataatgagcagaattc 11821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 45688362 - 45688306
Alignment:
Q  2 ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaattctt 58  Q
    ||||||| ||||| ||||| | ||| | |||||||||||||||||||| ||||||||    
T  45688362 ttttgaacttttactttgggaatgagcagaaccatttggataatgagcggaattctt 45688306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 5060894 - 5060845
Alignment:
Q  10 ttttattttggaactgaacggaaccatttggataatgagcagaattctta 59  Q
    ||||| ||||| | ||| ||||||||||||||||||||| ||||||||||    
T  5060894 ttttactttgggaatgagcggaaccatttggataatgagtagaattctta 5060845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 12969288 - 12969340
Alignment:
Q  2 ttttgaatttttattttggaactgaacggaaccatttggataatgagcagaatt 55  Q
    ||||||| ||||| ||||||| ||| ||||||||||| ||||||||||||||||    
T  12969288 ttttgaacttttactttggaa-tgagcggaaccatttagataatgagcagaatt 12969340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University