View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15040_high_21 (Length: 301)
Name: NF15040_high_21
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 8946480 - 8946755
Alignment:
| Q |
18 |
gcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttttaaaatcggggccgtcattacctgctgaac |
117 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946480 |
gcatgaaattcacgatccatagtaccagcagcaacagttgtcaaccatggtgttccattgcgaagagttttaaaatcggggccgtcattacctgctgaac |
8946579 |
T |
|
| Q |
118 |
aagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaatcaaaagttggacctaatgaaatcgaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946580 |
aagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaatcaaaagttggacctaatgaaatcgaaag |
8946679 |
T |
|
| Q |
218 |
aacatcaacaccgtccgatattgcggcatcaattgcagccattatatcagatgaaattgcaatcggatcttcattt |
293 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8946680 |
aacatcaacaccgtccgatattgcagcatcaattgcagccattatatcagatgaaattgcaattggatcttcattt |
8946755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 27 - 273
Target Start/End: Complemental strand, 8962601 - 8962355
Alignment:
| Q |
27 |
tcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttttaaaatcggggccgtcattacctgctgaacaagacacaa |
126 |
Q |
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|||||||| | ||||| ||||||||||||| ||| ||| ||| |||||||| ||||||| ||||| || || | ||||||||||||| |||||||| |
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| T |
8962601 |
tcacgatctaaagtactagcagcaacagttatcacccatggtattccattgtgaagagtgttaaaggaaggtccattattacctgctgaagtagacacaa |
8962502 |
T |
|
| Q |
127 |
aaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaatcaaaagttgga-cctaatgaaatcgaaagaacatcaa |
225 |
Q |
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||| ||||||||||||||||||||||| |||||||||||| |||||||||| |||| || || | |||| | |||||||| || ||||||||||| | |
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| T |
8962501 |
aaacacctttttccatagctgcaaaagtggctattgcaattggatcttcatacaaa-ttagatgcattgttgaagcctaatgatattgaaagaacatcca |
8962403 |
T |
|
| Q |
226 |
caccgtccgatattgcggcatcaattgcagccattatatcagatgaaa |
273 |
Q |
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||||||| ||||||||||||||||||||||| ||| | |||||||||| |
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| T |
8962402 |
caccgtctgatattgcggcatcaattgcagctattgtgtcagatgaaa |
8962355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 8974002 - 8973756
Alignment:
| Q |
22 |
gaaactcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttttaaaatcggggccgtcattacctgctgaacaaga |
121 |
Q |
| |
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||||||||||||||| ||||| |||||||| ||| | | ||| ||| |||||||| ||||||||||||| || || ||||||||||||||| ||| |
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| T |
8974002 |
gaaactcacgatccaaagtacttgcagcaacggttattacccatggtattccattgtgaagagttttaaaggaaggtccatcattacctgctgaagtaga |
8973903 |
T |
|
| Q |
122 |
cacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaatcaaaagtt-ggacctaatgaaatcgaaagaac |
220 |
Q |
| |
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||||| || ||| |||||||||||| ||||| ||| ||||| | |||||||||| ||||| || || ||| ||||| ||| || |||||||| |
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| T |
8973902 |
cacaacaacacccctttccatagctgaaaaagtggcaattgcgactggatcttcatacaaagatacat----tgttcaaacctagtgatattgaaagaac |
8973807 |
T |
|
| Q |
221 |
atcaacaccgtccgatattgcggcatcaattgcagccattatatcagatga |
271 |
Q |
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|||||||||||||||||||| |||||||| ||| || |||||||||||||| |
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| T |
8973806 |
atcaacaccgtccgatattgaggcatcaactgcggctattatatcagatga |
8973756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 8957582 - 8957346
Alignment:
| Q |
32 |
atccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttttaaaatcggggccgtcattacctgctgaacaagacacaaaaata |
131 |
Q |
| |
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||||| ||| |||||||| |||||| | | |||||||||||||||| ||||||||| || | || || | |||||| |||||| || ||||||| | |
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| T |
8957582 |
atccatagttccagcagccacagttatgacccaaggtgttccattgtgaagagtttcaagggcaggaccattattaccagctgaagtggaaacaaaaaca |
8957483 |
T |
|
| Q |
132 |
cctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaatcaaaagttggacctaatgaaatcgaaagaacatcaacaccgt |
231 |
Q |
| |
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|||||||||||||||||||| | || || |||| ||||| |||| |||||| | ||| | | ||| ||||| | ||||||||||||||||||| |
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| T |
8957482 |
cctttttccatagctgcaaatgttgcaatggcaacaggatcgtcatacaaaggcacgtcattaat---accaaatgatagtgaaagaacatcaacaccgt |
8957386 |
T |
|
| Q |
232 |
ccgatattgcggcatcaattgcagccattatatcagatga |
271 |
Q |
| |
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| T |
8957385 |
ctgatattgccgcgtcaattgcggctattacatcagatga |
8957346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 273
Target Start/End: Original strand, 21687637 - 21687880
Alignment:
| Q |
27 |
tcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttttaaaatcggggccgtcattacctgctgaacaagacacaa |
126 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| ||| ||| ||||||| ||| || |||||| ||| || | ||||||||| ||| |||||||| |
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| T |
21687637 |
tcacgatccaaagtaccagcagcaacagttatcacccatggtattccattatgaatagatttaaacgagggtccattattacctgcagaagtagacacaa |
21687736 |
T |
|
| Q |
127 |
aaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaatcaaaagttggacctaatgaaatcgaaagaacatcaac |
226 |
Q |
| |
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||||||||||||||||||||||||| | || ||||||| ||||||| || |||| | | |||| | | || | ||| || ||||||| ||||| |
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| T |
21687737 |
aaatacctttttccatagctgcaaatgtcgcaattgcaactggatctttatacaaaagaagatcatca---gagccaagtgatattgaaagaatgtcaac |
21687833 |
T |
|
| Q |
227 |
accgtccgatattgcggcatcaattgcagccattatatcagatgaaa |
273 |
Q |
| |
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|||||| |||||||| |||||||||||||| |||||||||||||||| |
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| T |
21687834 |
accgtcagatattgcagcatcaattgcagctattatatcagatgaaa |
21687880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 270
Target Start/End: Original strand, 34963259 - 34963494
Alignment:
| Q |
32 |
atccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttttaaaatcggggccgtcattacctgctgaacaagacacaaaaata |
131 |
Q |
| |
|
||||| ||| |||||||| |||||| | | |||||||||||||||| | | ||||||| | || || | ||| ||||||||| ||| ||||||| | |
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| T |
34963259 |
atccatagttccagcagccacagttataacccaaggtgttccattgtgtaatgttttaagggctggtccattatttcctgctgaagtagaaacaaaaaca |
34963358 |
T |
|
| Q |
132 |
cctttttccatagctgcaaaagaggctattgcaatcggatcttcattcaaaggtaaatcaaaagttggacctaatgaaatcgaaagaacatcaacaccgt |
231 |
Q |
| |
|
|||||||||||||||||||| | ||||| || | | |||||||| |||||||| ||| | || || ||||| | |||| |||||| ||||||| |
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| T |
34963359 |
cctttttccatagctgcaaatgttgctatagctacggcatcttcatacaaaggtacgtcattaatt---ccaaatgataatgaaataacatcgacaccgt |
34963455 |
T |
|
| Q |
232 |
ccgatattgcggcatcaattgcagccattatatcagatg |
270 |
Q |
| |
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| T |
34963456 |
cggatattgcagcgtcaattgcagctattacatcagatg |
34963494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 30099332 - 30099260
Alignment:
| Q |
105 |
ttacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcat |
177 |
Q |
| |
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|||||||| ||| | || |||| ||| |||||||||||||||||||| || |||||||| || |||||||||| |
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| T |
30099332 |
ttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgctataggatcttcat |
30099260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 30091581 - 30091653
Alignment:
| Q |
105 |
ttacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcat |
177 |
Q |
| |
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|||||||| ||| | || |||| ||| ||||| ||||||||||||||||| |||||||| || | |||||||| |
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| T |
30091581 |
ttacctgcagaagacgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcat |
30091653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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