View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15040_high_25 (Length: 256)
Name: NF15040_high_25
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 3658366 - 3658596
Alignment:
| Q |
18 |
agaatcagagggcaattgcatgtgtctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactaccgacaagttgcttgatccggtac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3658366 |
agaatcagagggcaattgcatgtgtctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactaccgacaagttgcttgatccggtac |
3658465 |
T |
|
| Q |
118 |
ttgcgggtaccggacaagaaaacaaggagcgcaaccacaattgcgaccgcacaaataccgtaaccccaacctctaccttggttatcttgtatgtacacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3658466 |
ttgcgggtaccggacaagaaaacaaggagcgcaaccacaattgcgaccgcacaaataccgtaaccccaacctctaccttggttatcttgtatgtacacaa |
3658565 |
T |
|
| Q |
218 |
gaacagtcactgctgccaaagaccctatgct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3658566 |
gaacagtcactgctgccaaagaccctatgct |
3658596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 3645934 - 3646010
Alignment:
| Q |
19 |
gaatcagagggcaattgcatgtgtctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactacc |
95 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
3645934 |
gaatcagaaggcaattgcaagtgcctcttcctccaagcggccacaaacactaccgcaatctgagtcaagggactacc |
3646010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 41873097 - 41873045
Alignment:
| Q |
43 |
ctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactacc |
95 |
Q |
| |
|
||||||||||||||||||||| | || || ||||||||||||||||||||||| |
|
|
| T |
41873097 |
ctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactacc |
41873045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University