View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15040_high_26 (Length: 256)
Name: NF15040_high_26
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 31191809 - 31191575
Alignment:
| Q |
5 |
tgtcgaagaatatttattctgagcataatttctttttcagagatctcagttttaacaaattaactggaccgattccgaacaccttgggtggcctgacgaa |
104 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
31191809 |
tgtcgaataatatttattctgagcataatttctttttcagagatctcagttttaacaaattaactggaccgattccgatcaccttgggtggcctgaagaa |
31191710 |
T |
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| Q |
105 |
cataagtatgctgtaagcaatatcctctgagttacttgtatacaccaaattgaattcttaaagatacctgaaagaaagtgtgatttaaactgatgaagac |
204 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31191709 |
cataaatatgctgtaagcaatatcctctgagttacttgtatacaccaaattgaattcttaaagatacctgaaagaaagtgtgatttaaacttatgaagac |
31191610 |
T |
|
| Q |
205 |
aaggttagaattgtttgaaacgaagcaacgagatt |
239 |
Q |
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| T |
31191609 |
aaggttagaattgtttgcaacgaagcaacgagatt |
31191575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 31199806 - 31199572
Alignment:
| Q |
5 |
tgtcgaagaatatttattctgagcataatttctttttcagagatctcagttttaacaaattaactggaccgattccgaacaccttgggtggcctgacgaa |
104 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
31199806 |
tgtcgaataatatttattctgagcataatttctttttcagagatctcagttttaacaaattaactggaccgattccgatcaccttgggtggcctgaagaa |
31199707 |
T |
|
| Q |
105 |
cataagtatgctgtaagcaatatcctctgagttacttgtatacaccaaattgaattcttaaagatacctgaaagaaagtgtgatttaaactgatgaagac |
204 |
Q |
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| T |
31199706 |
cataaatatgctgtaagcaatatcctctgagttacttgtatacaccaaattgaattcttaaagatacctgaaagaaagtgtgatttaaacttatgaagac |
31199607 |
T |
|
| Q |
205 |
aaggttagaattgtttgaaacgaagcaacgagatt |
239 |
Q |
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| T |
31199606 |
aaggttagaattgtttgcaacgaagcaacgagatt |
31199572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 31218433 - 31218207
Alignment:
| Q |
5 |
tgtcgaagaatatttattctgagcataatttctttttcagagatctcagttttaacaaattaactggaccgattccgaacaccttgggtggcctgacgaa |
104 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218433 |
tgtcgaataatatttattctgagcataatttctttttcagagatctcagttttaacaaattaactggaccgattccgaacaccttgggtggcctgacgag |
31218334 |
T |
|
| Q |
105 |
cataagtatgctgtaagcaatatcctctgagttacttgtatacaccaaattgaattcttaaagatacctgaaagaaagtgtgatttaaactgatgaagac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218333 |
cataagtatgctgtaagcaatatcctctgagttacttgtatacatcaaattgaattcttaaagatacctgaaagaaagtgtgatttaaactgatgaagac |
31218234 |
T |
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| Q |
205 |
aaggttagaattgtttgaaacgaagca |
231 |
Q |
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| T |
31218233 |
aaggttagaattgtttgaagcgaagca |
31218207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 31180756 - 31180521
Alignment:
| Q |
5 |
tgtcgaagaatatttattctgagcataatttctttttcagagatctcagttttaacaaattaactggaccgattccgaacaccttgggtggcctgacgaa |
104 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31180756 |
tgtcgaataatatttattctgagcataattt--ttttcagagatctcagctttaacaaattaactggaccgattccgaacaccttgggtggcctgaagaa |
31180659 |
T |
|
| Q |
105 |
cataagtatgctgtaagcaatatcctctgagttacttgtatacaccaaattgaattcttaaagatacctgaaaga---aagtgtgatttaaactgatgaa |
201 |
Q |
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||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| | |
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| T |
31180658 |
cataaatatgctgtaagcaatatcctccgagtttcttgtatacaccaaattgaattcttaaagatacctgcaagatattagtgtgatttaaacagatgta |
31180559 |
T |
|
| Q |
202 |
gacaaggttagaattgtttgaaacgaagcaacgagatt |
239 |
Q |
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| T |
31180558 |
gtcaaggttagaattgtttgcaacgaagcaacgagatt |
31180521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 31233811 - 31233618
Alignment:
| Q |
28 |
cataatttctttttcagagatctcagttttaacaaattaactggaccgattccgaacaccttgggtggcctgacgaacataagtatgctgtaagcaatat |
127 |
Q |
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|||||||| |||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||| ||| ||||||||||||| |
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| T |
31233811 |
cataattttattttcagagacctcagttttaacaaattaagcggacagattccgaacactttgggtggccttgagaacataaatattctgtaagcaatat |
31233712 |
T |
|
| Q |
128 |
cctctgagttacttgtatac------accaaattgaattcttaaagatacctgaaagaa---agtgtgatttaaactgatgaagacaaggttag |
212 |
Q |
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||| |||||||||||||||| | | |||||||||||||| ||||| || ||||| |||||||||||||||||| |||||||| |||| |
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| T |
31233711 |
cctttgagttacttgtatacaactaaaaccaattgaattcttaatgatacttgcaagaacttagtgtgatttaaactgatcaagacaagattag |
31233618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 31245679 - 31245554
Alignment:
| Q |
23 |
ctgagcataatttctttttcagagatctcagttttaacaaattaactggaccgattccgaacaccttgggtggcctgacgaacataagtatgctgtaagc |
122 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||| ||||| | |||||||| ||| |||||||| |
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| T |
31245679 |
ctgaacataatttctttttcagagacctcagttttaacaaattaagcggacagattccgaacactttgggcggcctcaagaacataaatatactgtaagc |
31245580 |
T |
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| Q |
123 |
aatatcctctgagttacttgtataca |
148 |
Q |
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| T |
31245579 |
atcatcctttgagttacttgtataca |
31245554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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