View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15040_high_29 (Length: 238)
Name: NF15040_high_29
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 7062721 - 7062575
Alignment:
| Q |
75 |
agttggataaatcaatagaaggtctaacctgatggatgccaaaagagaaacaagggtacttaaaatgaatctaaatttatggttgtaagcctgcaggaat |
174 |
Q |
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| T |
7062721 |
agttggataaatcaatagaaggtctcaactgatggatgccaaaagagaaacaagggtacttaaaatgaatctaaatttatggttgtaagcttgctggaat |
7062622 |
T |
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| Q |
175 |
tttctggtgcagactgctttggacataaggttgataggttgacttat |
221 |
Q |
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| T |
7062621 |
tttctggtgcagactgctttggacataaggttgataggatgacttat |
7062575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 7010640 - 7010578
Alignment:
| Q |
159 |
gtaagcctgcaggaattttctggtgcagactgctttggacataaggttgataggttgacttat |
221 |
Q |
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| T |
7010640 |
gtaatcctgctgggattttctggtgcagactgctttggacataaggctgataggaggacttat |
7010578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 7025998 - 7025936
Alignment:
| Q |
159 |
gtaagcctgcaggaattttctggtgcagactgctttggacataaggttgataggttgacttat |
221 |
Q |
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| T |
7025998 |
gtaatcctgctgggattttctggtgcagactgctttggacataaggctgataggaggacttat |
7025936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 7056484 - 7056422
Alignment:
| Q |
159 |
gtaagcctgcaggaattttctggtgcagactgctttggacataaggttgataggttgacttat |
221 |
Q |
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| T |
7056484 |
gtaagactgctgggattttctggtgcagactgctttggacataaggctgataggaggacttat |
7056422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 7010737 - 7010670
Alignment:
| Q |
91 |
agaaggtctaacctgatggatgccaaaagagaaacaagggtacttaaaatgaatctaaatttatggttgt |
160 |
Q |
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| T |
7010737 |
agaaggtctcacctgatggatgccaaaaga-ataatagggtacttaaaa-gaatctaaatgtatggttgt |
7010670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 7026095 - 7026028
Alignment:
| Q |
91 |
agaaggtctaacctgatggatgccaaaagagaaacaagggtacttaaaatgaatctaaatttatggttgt |
160 |
Q |
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| T |
7026095 |
agaaggtctcacctgatggatgccaaaaga-ataatagggtacttaaaa-gaatctaaatgtatggttgt |
7026028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 76
Target Start/End: Complemental strand, 7062830 - 7062799
Alignment:
| Q |
45 |
acatgaaccttgaaaagacaattaaagagaag |
76 |
Q |
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| T |
7062830 |
acatgaaccttgaaaagacaattaaagagaag |
7062799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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