View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15040_high_4 (Length: 654)
Name: NF15040_high_4
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 637
Target Start/End: Original strand, 33431588 - 33432210
Alignment:
| Q |
17 |
atatatgttaatcttatgtattagttaaacatttacacggtaaaagaagaataatatataaacagataagtatacaggaggtacttcaacccgatacaat |
116 |
Q |
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| T |
33431588 |
atatatgttaatcttatgtattagttaaatgtttacacggtaaaaggagaataatatacaaacagataggtatacaagaggtacttcaacccgatacaat |
33431687 |
T |
|
| Q |
117 |
gtgaaaactaacacatgtaatctttcnnnnnnnnnnnnnnnnnnnnnntaggagttattatagtctttaacgcgtgattatatctagagagaaattatat |
216 |
Q |
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| T |
33431688 |
gtgaaaactaacacatgtaatctttcattttaattttttatttatttataggagttattatagtctttaacgcgtgattatatctaaagagaaattatat |
33431787 |
T |
|
| Q |
217 |
atagtctctctcacatgactcaagaaaaataattgaagtattgagagagataaagatcatatagaatctaggcgtatatttataacttaagattgaaatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33431788 |
atagtctctctcacatgactcaagaaaaataattgaagtattgagagagataaagatcatatagaatctaggcgtatatttataacttaagattgaaatc |
33431887 |
T |
|
| Q |
317 |
taaacacaatctaatccagctatgcaattattcctaagttttgtgctaatagcttaaaaaagagcataggagatctcatttcaaagcaaggttttaaggg |
416 |
Q |
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| T |
33431888 |
taaacacaatctgatccagctatgcaattattcctaagttttgtgctaatagcttaaaaaagagcataggagatctcatttcaaagcaaggttttaaggg |
33431987 |
T |
|
| Q |
417 |
atttgcaaaggaaaagccatcatatacctt--tatatatatctctaccttgatatatagaaggaattagaatatggatggtagtaattattttggagatt |
514 |
Q |
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| T |
33431988 |
atttgcaaaggaaaagccatcatatacctttatatatatatctctaccttgatatatagaaggaattagaatatggatggtagtaattattttggagatt |
33432087 |
T |
|
| Q |
515 |
caaacatgggaaatgaaagagtaagtggatcttcatcaagaaaagggaagaaaaacaatcaagataaaccaaagcaaccacaaagaggattaggtgttgc |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33432088 |
caaacatgggaaatgaaagagtaagtggatcttcatcaagaaaagggaagaaaaaccatcaagataaaccaaagcaaccacaaagaggattaggtgttgc |
33432187 |
T |
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| Q |
615 |
tcaattggaaaaaattagattac |
637 |
Q |
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| T |
33432188 |
tcaattggaaaaaattagattac |
33432210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 545 - 637
Target Start/End: Original strand, 43337139 - 43337231
Alignment:
| Q |
545 |
cttcatcaagaaaagggaagaaaaacaatcaagataaaccaaagcaaccacaaagaggattaggtgttgctcaattggaaaaaattagattac |
637 |
Q |
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| T |
43337139 |
cttcatcaagaaaagggaagaagagtaattcagataagccaaagcaacctcaaagaggacttggtgttgctcagttggagaaaatcagattac |
43337231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 548
Target Start/End: Original strand, 43337060 - 43337121
Alignment:
| Q |
487 |
atggatggtagtaattattttggagattcaaacatgggaaatgaaagagtaagtggatcttc |
548 |
Q |
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|||||| ||||||||||||||||||| ||||| | ||| ||||||||| || ||||||||| |
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| T |
43337060 |
atggatagtagtaattattttggagaaccaaaccttggatatgaaagaggaaatggatcttc |
43337121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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