View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15040_low_11 (Length: 514)
Name: NF15040_low_11
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_low_11 |
 | |
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| [»] scaffold0532 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 11 - 497
Target Start/End: Complemental strand, 6740286 - 6739800
Alignment:
| Q |
11 |
cacagagccggtaaagcagaatgcagactaccaaaactgggagagagcggactccatggtgatggcatggatcataaacgcgacggatcagaaacttcac |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6740286 |
cacaaagccggtaaagcagaatgcagactaccaaaacagggagagagcggactccatggtgatggcatggatcataaacgcgacggatcagaaacttcac |
6740187 |
T |
|
| Q |
111 |
ggcagtatctcgcatgcaaccaccgcgagagacgtctggctggatctcgaagagcgttttgctcaagcaaatgcacctagaatttcccaactgtggcgca |
210 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6740186 |
gacagtatctcgcatgcaaccaccgcgagagacgtctggctggatctcgaagagcgttttgctcaagcaaatgcacctagaatttcccaactgtggcgca |
6740087 |
T |
|
| Q |
211 |
atctgtgtctaatgcagaaagatgaaggtttgagtgtgaccgaattttacactcaattcaagagcctctattatgaattaaatgaacttcaaccacttcc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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|
| T |
6740086 |
atctgtgtctaatgcagaaagatgaaggtttgagtgtgaccgaatttcacactcaattcaagagcctctatgatgaattaaatgaacttcaaccactgcc |
6739987 |
T |
|
| Q |
311 |
atcatgcacatgtggagcttcgaaagaattgatgaaaagagaagaagatcaacaacttcacctattcctgggaggtttagacagtgagcaatataatcat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6739986 |
atcatgcacatgtggagcttcgaaagaattgatgaaaagagaagaagatcaacaacttcacctattcctgggaggtttagacagtgagcaatataatcat |
6739887 |
T |
|
| Q |
411 |
gtcaagaccaccatcttgaactctgatccactgccttcactcaggcgtgctctcaatcatattctaagggaggaggcgcgttacaat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
6739886 |
gtcaagaccaccatcttgaactctgatccactgccctcactcaggcgtgctctcaatcatattctaagggaggaagcgcgttacaat |
6739800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 9584561 - 9584700
Alignment:
| Q |
48 |
tgggagagagcggactccatggtgatggcatggatcataaacgcgacggatcagaaacttcacggcagtatctcgcatgcaaccaccgcgagagacgtct |
147 |
Q |
| |
|
|||||||||||||| || ||||| | |||||||||||| ||| | || ||||||||||| || ||| ||| || |||||| | ||||| || ||| ||| |
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|
| T |
9584561 |
tgggagagagcggattcaatggtaacggcatggatcatcaactccactgatcagaaactgcatagcaatatttcacatgcatcaaccgcaagggacatct |
9584660 |
T |
|
| Q |
148 |
ggctggatctcgaagagcgttttgctcaagcaaatgcacc |
187 |
Q |
| |
|
|||| ||||||||||| || || |||||| | |||||||| |
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|
| T |
9584661 |
ggctcgatctcgaagaacgcttcgctcaaaccaatgcacc |
9584700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 11 - 497
Target Start/End: Complemental strand, 52081881 - 52081395
Alignment:
| Q |
11 |
cacagagccggtaaagcagaatgcagactaccaaaactgggagagagcggactccatggtgatggcatggatcataaacgcgacggatcagaaacttcac |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52081881 |
cacaaagccggtaaagcagaatgcagactaccaaaactgggagagagcggactccatggtgatggcatggatcataaacgcgacggatcagaaacttcac |
52081782 |
T |
|
| Q |
111 |
ggcagtatctcgcatgcaaccaccgcgagagacgtctggctggatctcgaagagcgttttgctcaagcaaatgcacctagaatttcccaactgtggcgca |
210 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52081781 |
gtcagtatctcgcatgcaaccaccgcgagagacttctggctggatctcgaagagcgttttgctcaagcaaatgcacctagaatttcccaactgtggcgca |
52081682 |
T |
|
| Q |
211 |
atctgtgtctaatgcagaaagatgaaggtttgagtgtgaccgaattttacactcaattcaagagcctctattatgaattaaatgaacttcaaccacttcc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
52081681 |
atctgtgtctaatgcagaaagatgaaggtttgagtgtgaccgaattttacactcaattcaagagcctctatgatgaattaaatgaacttcaaccactgcc |
52081582 |
T |
|
| Q |
311 |
atcatgcacatgtggagcttcgaaagaattgatgaaaagagaagaagatcaacaacttcacctattcctgggaggtttagacagtgagcaatataatcat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52081581 |
atcatgcacatgtggagcttcgaaagaattgatgaaaagagaagaagatcaacaacttcacctattcctgggaggtttagacagtgagcaatataatcat |
52081482 |
T |
|
| Q |
411 |
gtcaagaccaccatcttgaactctgatccactgccttcactcaggcgtgctctcaatcatattctaagggaggaggcgcgttacaat |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
52081481 |
gtcaagaccaccatcttgaactctgatccactgccctcactcaggcgtgctttcaatcatattctaagggaggatgcgcgttacaat |
52081395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: scaffold0532
Description:
Target: scaffold0532; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 45 - 446
Target Start/End: Complemental strand, 2629 - 2228
Alignment:
| Q |
45 |
aactgggagagagcggactccatggtgatggcatggatcataaacgcgacggatcagaaacttcacggcagtatctcgcatgcaaccaccgcgagagacg |
144 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||| | || ||| ||||||| || |||||| || |||||| | || ||||| || |
|
|
| T |
2629 |
aactgggagagagcagactcaatggtgatggcatggatcataaattccactgatgagaaactgcatatcagtatttctcatgcatcaacggcgagggaaa |
2530 |
T |
|
| Q |
145 |
tctggctggatctcgaagagcgttttgctcaagcaaatgcacctagaatttcccaactgtggcgcaatctgtgtctaatgcagaaagatgaaggtttgag |
244 |
Q |
| |
|
||||||| |||||||||||||| ||||| || | ||||||| || ||| ||| | ||||||| | | || |||||||||| || |||| | | || |
|
|
| T |
2529 |
tctggcttgatctcgaagagcgctttgcacagaccaatgcactcaggattcatcaattatggcgcactatctgcttaatgcagaaggaggaagatctaag |
2430 |
T |
|
| Q |
245 |
tgtgaccgaattttacactcaattcaagagcctctattatgaattaaatgaacttcaaccacttccatcatgcacatgtggagcttcgaaagaattgatg |
344 |
Q |
| |
|
|||||| ||||||||||| | ||||| |||| | ||||| | ||||| || ||||||||||| |||||| ||||| || || || ||||||||| |
|
|
| T |
2429 |
tgtgactgaattttacaccaagttcaaagttctctttgatgaacttaatgagctccaaccacttcctgaatgcacttgtggtgcatcaaaggaattgatg |
2330 |
T |
|
| Q |
345 |
aaaagagaagaagatcaacaacttcacctattcctgggaggtttagacagtgagcaatataatcatgtcaagaccaccatcttgaactctgatccactgc |
444 |
Q |
| |
|
| ||||||||||| |||| ||||||||| || || ||| || | |||| ||| ||||| | |||||| ||| | ||||| | || ||||||||| ||| |
|
|
| T |
2329 |
cagagagaagaagaacaacgacttcacctctttcttggaagtcttgacaatgaacaatacagtcatgttaaggcaaccattcttaattctgatccattgc |
2230 |
T |
|
| Q |
445 |
ct |
446 |
Q |
| |
|
|| |
|
|
| T |
2229 |
ct |
2228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 45 - 446
Target Start/End: Complemental strand, 8834 - 8433
Alignment:
| Q |
45 |
aactgggagagagcggactccatggtgatggcatggatcataaacgcgacggatcagaaacttcacggcagtatctcgcatgcaaccaccgcgagagacg |
144 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||| | || ||| ||||||| || |||||| || |||||| | || ||||| || |
|
|
| T |
8834 |
aactgggagagagcagactcaatggtgatggcatggatcataaattccactgatgagaaactgcataacagtatttctcatgcatcaacggcgagggaaa |
8735 |
T |
|
| Q |
145 |
tctggctggatctcgaagagcgttttgctcaagcaaatgcacctagaatttcccaactgtggcgcaatctgtgtctaatgcagaaagatgaaggtttgag |
244 |
Q |
| |
|
||||||| |||||||||||||| ||||| || | ||||||| || || ||| | ||||||| | || |||||||||| || |||| | | || |
|
|
| T |
8734 |
tctggcttgatctcgaagagcgctttgcacagaccaatgcacacaggatccatcaattatggcgcacgatctgcttaatgcagaaggaggaagatctaag |
8635 |
T |
|
| Q |
245 |
tgtgaccgaattttacactcaattcaagagc-ctctattatgaattaaatgaacttcaaccacttccatcatgcacatgtggagcttcgaaagaattgat |
343 |
Q |
| |
|
|||||| ||||||||||| | ||||| ||| |||||| ||||| | ||||| || ||||||||||| |||||| ||||| || || || |||||||| |
|
|
| T |
8634 |
tgtgactgaattttacaccaagttcaa-agctctctatgatgaacttaatgagctccaaccacttcctgaatgcacttgtggtgcatcaaaggaattgat |
8536 |
T |
|
| Q |
344 |
gaaaagagaagaagatcaacaacttcacctattcctgggaggtttagacagtgagcaatataatcatgtcaagaccaccatcttgaactctgatccactg |
443 |
Q |
| |
|
| | ||||||||||| |||| ||||||||| || || ||| || | |||| ||| ||||| | |||||| ||| | ||||| | || ||||||||| || |
|
|
| T |
8535 |
gcagagagaagaagaacaacgacttcacctctttcttggaagtcttgacaatgaacaatacagtcatgttaaggcaaccattcttaattctgatccattg |
8436 |
T |
|
| Q |
444 |
cct |
446 |
Q |
| |
|
||| |
|
|
| T |
8435 |
cct |
8433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 274
Target Start/End: Complemental strand, 33724142 - 33724003
Alignment:
| Q |
135 |
gcgagagacgtctggctggatctcgaagagcgttttgctcaagcaaatgcacctagaatttcccaactgtggcgcaatctgtgtctaatgcagaaagatg |
234 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||||||||||||| | || |||| || || ||| | ||||||||||||||||| |||||| | |||| |
|
|
| T |
33724142 |
gcgagggacatctggctcgatctcgaagagcgttttgctcaaaccaacacaccaaggatccatcaattatggcgcaatctgtgtcttatgcaggaggatg |
33724043 |
T |
|
| Q |
235 |
aaggtttgagtgtgaccgaattttacactcaattcaagag |
274 |
Q |
| |
|
| | |||||||| || | |||||||||||| |||||||| |
|
|
| T |
33724042 |
atgagttgagtgtaacagcattttacactcagttcaagag |
33724003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 274
Target Start/End: Complemental strand, 33797605 - 33797467
Alignment:
| Q |
136 |
cgagagacgtctggctggatctcgaagagcgttttgctcaagcaaatgcacctagaatttcccaactgtggcgcaatctgtgtctaatgcagaaagatga |
235 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||| | || ||||| || || ||| | ||||||||||||||||| |||||||| ||||| |
|
|
| T |
33797605 |
cgagggacatctggctcgatctcgaagagcgttttgctcaaaccaacgcaccaaggatccatcaattatggcgcaatctgtgtcttatgcagaaggatga |
33797506 |
T |
|
| Q |
236 |
aggtttgagtgtgaccgaattttacactcaattcaagag |
274 |
Q |
| |
|
| |||||||| || |||||||||| | |||||||| |
|
|
| T |
33797505 |
tgagttgagtgtaacaacattttacacttagttcaagag |
33797467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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