View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15040_low_12 (Length: 460)
Name: NF15040_low_12
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_low_12 |
 | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
| [»] scaffold0516 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 93 - 441
Target Start/End: Original strand, 5766317 - 5766665
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5766317 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
5766416 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
5766417 |
atgtaacggttgtagtctctttttatttacttgatctcgtgattccttgtctcattgtgtttacggtaaaatgtcacaatatttttttagataggtaaag |
5766516 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
5766517 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
5766616 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
5766617 |
aaaaaataataatttatttatgggttaatatgtctttaccccctgtaat |
5766665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 93 - 441
Target Start/End: Original strand, 39065062 - 39065410
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39065062 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatataacagtaggaca |
39065161 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
39065162 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtttcaatgtgtttacggtaaaatgtcacaatatttttttagataggtaaag |
39065261 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
39065262 |
tttcatattgtttaatttaagtttaacaattagattgaagaaaaatatgacaacttataatttttttcttgatttatattgtatttcaaacggttcaagt |
39065361 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
39065362 |
aaaaaataataatttatttaaggattaataggtctttaccccctgtaat |
39065410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 93 - 434
Target Start/End: Original strand, 25417471 - 25417812
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25417471 |
gctccaaagatgcgacactcatcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgcttcatatatagcagtaggaca |
25417570 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
25417571 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaag |
25417670 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
25417671 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
25417770 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttacccc |
434 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
25417771 |
aaaaaataataatttatttaagacctaataggtctttacccc |
25417812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 93 - 413
Target Start/End: Original strand, 47231840 - 47232160
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47231840 |
gctccaaatatgcgacacccatcttgttcctcagctccttaaacttgccatgcttcacaaattttgttggaacgtctgcttcatatatagcagtaggaca |
47231939 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
47231940 |
atgtaacggttttagtctccttttatttacttgatctcgtgattcattgtctaaatgtgtttacggtaaaatgtcacaatatttttttagataggtaaag |
47232039 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
47232040 |
tatcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
47232139 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaa |
413 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
47232140 |
aaaaaataataatttatttaa |
47232160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 398
Target Start/End: Complemental strand, 5433238 - 5433118
Alignment:
| Q |
281 |
agataggtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataa---nnnnnnncttgatttacattgtatt |
377 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
5433238 |
agataggtaaagtttcaaagtgtttaatttaaatttagcaattatattggagaaaaatatgacaacttttaattttgtttttcttgatttacattgtatt |
5433139 |
T |
|
| Q |
378 |
tcaaattgttcaagtaaaaaa |
398 |
Q |
| |
|
|||||| | |||||||||||| |
|
|
| T |
5433138 |
tcaaatggctcaagtaaaaaa |
5433118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 5433457 - 5433362
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtag |
188 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||| ||||| | ||| | ||||||||||||||| ||||| |
|
|
| T |
5433457 |
gctccaaagatgcgacatccatcttgttcatcacctcctcaaacttgtcatgcttcacaatttttgttagaaagcctgcttcatatatagtagtag |
5433362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 9553390 - 9553427
Alignment:
| Q |
404 |
atttatttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
9553390 |
atttttttaagggttaataggtctttaccccctgtaat |
9553427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 9915641 - 9915678
Alignment:
| Q |
404 |
atttatttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
9915641 |
atttttttaagggttaataggtctttaccccctgtaat |
9915678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 9923553 - 9923590
Alignment:
| Q |
404 |
atttatttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
9923553 |
atttttttaagggttaataggtctttaccccctgtaat |
9923590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 441
Target Start/End: Original strand, 23784578 - 23784611
Alignment:
| Q |
408 |
atttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
23784578 |
atttaagggttaataggtctttaccccctgtaat |
23784611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 93 - 433
Target Start/End: Complemental strand, 36993361 - 36993021
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36993361 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
36993262 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
36993261 |
atgtaacggttgtagtctcattttatttacttgatctcgtgattccttgtctcactgtgtttacggtaaaatgtcacaatatttttttagataggtaaag |
36993162 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
36993161 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
36993062 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttaccc |
433 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
36993061 |
aaaaaataataatttatttatgggttaataggtctttaccc |
36993021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 94 - 413
Target Start/End: Original strand, 37299964 - 37300289
Alignment:
| Q |
94 |
ctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggacaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |
|
|
| T |
37299964 |
ctccaaagatgcgacacccatcttgttcctcagctcctcaaacttgtcatgcttcacaaattttgttggaatgtctgcttcatatatagcagtagggcaa |
37300063 |
T |
|
| Q |
194 |
tgtaacggttgtagtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagatag |
286 |
Q |
| |
|
|||| | ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
37300064 |
tgtagcagtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttacgataaaatgtcacaatatttttttagatat |
37300163 |
T |
|
| Q |
287 |
gtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| || |
|
|
| T |
37300164 |
gtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttatattgta-ttcaaatggt |
37300262 |
T |
|
| Q |
387 |
tcaagtaaaaaatactaatttatttaa |
413 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
37300263 |
tcaagtaaaaaataataatttatttaa |
37300289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 93 - 433
Target Start/End: Complemental strand, 46094618 - 46094278
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46094618 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
46094519 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
46094518 |
atgtaacggttgtagtctcattttatttacttgatctcgtgattccttgtctcactgtgtttacggtaaaatgtcacaatatttttttagataggtaaag |
46094419 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
46094418 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
46094319 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttaccc |
433 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
46094318 |
aaaaaataataatttatttatgggttaataggtctttaccc |
46094278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 93 - 434
Target Start/End: Original strand, 2502898 - 2503239
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2502898 |
gctccaaagatgcgacactcatcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgcttcatatatagcagtaggaca |
2502997 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
2502998 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaag |
2503097 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
2503098 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
2503197 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttacccc |
434 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
2503198 |
aaaaaataataatttatttaagacctaataggtctttacccc |
2503239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 96 - 413
Target Start/End: Original strand, 53828730 - 53829047
Alignment:
| Q |
96 |
ccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggacaatg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
53828730 |
ccaaagatgcgacacccatcttgttcctcagctccttaaacttttcatgcttcacaaattttgttggaatgtctgcttcatatataacagtaggacaatg |
53828829 |
T |
|
| Q |
196 |
taacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaagttt |
295 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53828830 |
taacagttttagtcttcttttatttacttgatctcgtgattccttgtctcaatgtgtttacggtaaaatgtcacaatattttttcagataggtaaagttt |
53828929 |
T |
|
| Q |
296 |
catagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagtaaa |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53828930 |
catagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaa |
53829029 |
T |
|
| Q |
396 |
aaatactaatttatttaa |
413 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
53829030 |
aaataataatttatttaa |
53829047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 93 - 413
Target Start/End: Original strand, 34735552 - 34735878
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||| || |
|
|
| T |
34735552 |
gctccaaagatgcgacatccatcttgttcctcagctcctcaaacttgtcatgcttcacaaattttgttgaaatgtctgcttcatatatagcagtagggca |
34735651 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagata |
285 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| | | ||||||||||||||| |||| |
|
|
| T |
34735652 |
atgtagcggtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatgataaaatgtcacaatatttttttagatt |
34735751 |
T |
|
| Q |
286 |
ggtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattg |
385 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |
|
|
| T |
34735752 |
tgtaaagtttcatagtttttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgta-ttcaaatgg |
34735850 |
T |
|
| Q |
386 |
ttcaagtaaaaaatactaatttatttaa |
413 |
Q |
| |
|
|| |||||||||||| ||||||||||| |
|
|
| T |
34735851 |
ttgaagtaaaaaataaaaatttatttaa |
34735878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 96 - 413
Target Start/End: Original strand, 21630806 - 21631131
Alignment:
| Q |
96 |
ccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttc-atatatagcagtaggacaat |
194 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
21630806 |
ccaaagatgcgacacctatcttgttccttaactcctcaaacttgtcatgcttcacaaattttgttggaaagtcagcttccatatatagcagtaggacaat |
21630905 |
T |
|
| Q |
195 |
gtaacggttgtagtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagatagg |
287 |
Q |
| |
|
||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
21630906 |
gtagcggtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtctacgctaaaatgtcacaatatttttttagatagt |
21631005 |
T |
|
| Q |
288 |
taaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgtt |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||| || |
|
|
| T |
21631006 |
taaagtttcatagtgtttaatttaagtttaacaattagactggagaaaaatatgacaacttataatttttttcttgatttaaattgtatttcgaataatt |
21631105 |
T |
|
| Q |
388 |
caagtaaaaaatactaatttatttaa |
413 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
21631106 |
caagtaaaaaataataatttatttaa |
21631131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 160 - 413
Target Start/End: Complemental strand, 21804928 - 21804667
Alignment:
| Q |
160 |
tggaacgtctgcttc-atatatagcagtaggacaatgtaacggttgtagtctccttttatttacttgatctc-------gtgattccttgtctcaatgtg |
251 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
21804928 |
tggaaagtctgcttccatatatagcagtaggacaatgtagcggtttcagtctccctttatttacttgatctctaatacagtgattctttgtctctatgtg |
21804829 |
T |
|
| Q |
252 |
ttcacggtaaaatgtcacaatannnnnnnagataggtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttata |
351 |
Q |
| |
|
| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21804828 |
tctacgctaaaatgtcacaatatttttttagatagttaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttata |
21804729 |
T |
|
| Q |
352 |
annnnnnncttgatttacattgtatttcaaattgttcaagtaaaaaatactaatttatttaa |
413 |
Q |
| |
|
| ||||||||| |||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
21804728 |
atttttttcttgatttaaattgtatttcgaataattcaagtaaaaaataataatttatttaa |
21804667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 20038856 - 20038761
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtagg |
189 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
20038856 |
gctccaaagatgcgacactcatcttgttcctcaactcctcaaacttgtcatgcttcacaaattttg-ttaaacgtctgcttcatatatagcagtagg |
20038761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 29248237 - 29248269
Alignment:
| Q |
409 |
tttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
29248237 |
tttaagggttaataggtctttaccccctgtaat |
29248269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 93 - 434
Target Start/End: Original strand, 13431349 - 13431690
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13431349 |
gctccaaagatgcgacactcatcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgcttcatatatagcagtaggaca |
13431448 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
13431449 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaag |
13431548 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
13431549 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
13431648 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttacccc |
434 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
13431649 |
aaaaaataataatttatttaagacctaataggtctttacccc |
13431690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 93 - 413
Target Start/End: Complemental strand, 18884689 - 18884360
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
18884689 |
gctccaaagatgtgacacccatcttgtttctcaactcctcaaacttgtcatgcttcacaatttttgtaggaacgtctgcttcgtatatagcaataggaca |
18884590 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagata |
285 |
Q |
| |
|
||||| ||||| || | || ||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
18884589 |
atgtagcggttccagccaccctttctttacttgatctctaatacattgattccttgtctcaatgtgtttacggtaaaatg--acaatatttttttagata |
18884492 |
T |
|
| Q |
286 |
ggtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataa----nnnnnnncttgatttacattgtatttcaa |
381 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
18884491 |
ggtaaagtttcatagtgtataatttaagtttaacaattagattggagaaaaatatgataacttataattttttttcttcttgatttacattgtatttcaa |
18884392 |
T |
|
| Q |
382 |
attgttcaagtaaaaaatactaatttatttaa |
413 |
Q |
| |
|
|| ||||||||||||| | || ||||||||| |
|
|
| T |
18884391 |
ataattcaagtaaaaaacaatagtttatttaa |
18884360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 442
Target Start/End: Complemental strand, 24325808 - 24325769
Alignment:
| Q |
403 |
aatttatttaagggttaataggtctttaccccatgtaatt |
442 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
24325808 |
aatttttttaagggttaataggtctttaccccgtgtaatt |
24325769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 441
Target Start/End: Complemental strand, 3063551 - 3063513
Alignment:
| Q |
403 |
aatttatttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
3063551 |
aatttttttaagggttaataggtctttaccccctgtaat |
3063513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 441
Target Start/End: Complemental strand, 29942506 - 29942473
Alignment:
| Q |
408 |
atttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
29942506 |
atttaagggttaataggtctttaccccctgtaat |
29942473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 93 - 434
Target Start/End: Complemental strand, 52351972 - 52351631
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52351972 |
gctccaaagatgcgacactcatcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgcttcatatatagcagtaggaca |
52351873 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
52351872 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaag |
52351773 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
52351772 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
52351673 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttacccc |
434 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
52351672 |
aaaaaataataatttatttaagacctaataggtctttacccc |
52351631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 93 - 413
Target Start/End: Complemental strand, 48268379 - 48268059
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48268379 |
gctccaaagatgcgacactcatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgttggaacgtctgcttcatatatagcagtaggaca |
48268280 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
48268279 |
atgtaacagttttagtctccttttatttacttgatctcgtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagataggtaaag |
48268180 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
48268179 |
tttcatagtgtttaatttaagtttaacaattaaattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
48268080 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaa |
413 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
48268079 |
aaaaaataataatttatttaa |
48268059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 93 - 413
Target Start/End: Complemental strand, 35872479 - 35872156
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
35872479 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgttggaacgtctgcttcatatatagtgataggaca |
35872380 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaata--nnnnnnnagataggtaa |
290 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
35872379 |
atgtaacggttttagtctccttttatttacttgatctcatgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttttagataggtaa |
35872280 |
T |
|
| Q |
291 |
agtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataa-nnnnnnncttgatttacattgtatttcaaattgttca |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
35872279 |
agtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataattttttttcttgatttaccttgtatttcaaatggttca |
35872180 |
T |
|
| Q |
390 |
agtaaaaaatactaatttatttaa |
413 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
35872179 |
agtaaaaaataataatttatttaa |
35872156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 93 - 434
Target Start/End: Original strand, 7571987 - 7572328
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7571987 |
gctccaaagatgcgacactcatcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgcttcatatatagcagtaggaca |
7572086 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
7572087 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaag |
7572186 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
7572187 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
7572286 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttacccc |
434 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
7572287 |
aaaaaataataatttatttaagacctaataggtctttacccc |
7572328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 93 - 434
Target Start/End: Original strand, 16666582 - 16666923
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16666582 |
gctccaaagatgcgacactcatcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgcttcatatatagcagtaggaca |
16666681 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
16666682 |
atgtaacgtttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaag |
16666781 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
16666782 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
16666881 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttacccc |
434 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
16666882 |
aaaaaataataatttatttaagacctaataggtctttacccc |
16666923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 206 - 400
Target Start/End: Complemental strand, 29457342 - 29457141
Alignment:
| Q |
206 |
agtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaagtttcat |
298 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
29457342 |
agtctccctttatttacttgatctctaatacagtgattccttgtctcattgtgtttatggtaaaatgtcacaatatttttttcgataggtaaaatttcat |
29457243 |
T |
|
| Q |
299 |
agtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagtaaaaaa |
398 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
29457242 |
agtgtttaatttaaatttaacaattagattggagaaaaatatgtcaacttataatttttttcttgatttacattgtatttcaaatggttgaagtaaaaaa |
29457143 |
T |
|
| Q |
399 |
ta |
400 |
Q |
| |
|
|| |
|
|
| T |
29457142 |
ta |
29457141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 231 - 400
Target Start/End: Complemental strand, 43566105 - 43565932
Alignment:
| Q |
231 |
gtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaagtttcatagtgtttaatttaagtttaacaattagattgg |
330 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43566105 |
gtgattccttgtctcattgtgtttatggtaaaatgtcacaatatttttttcgataggtaaaatttcataatgtttaatttaagtttaacaattagattgg |
43566006 |
T |
|
| Q |
331 |
agaaaaatatgacaacttataa----nnnnnnncttgatttacattgtatttcaaattgttcaagtaaaaaata |
400 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
43566005 |
agaaaaatatgtcaacttataattttttttcttcttgatttacattgtatttcaaatggttgaagtaaaaaata |
43565932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 43566227 - 43566147
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgctt |
173 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
43566227 |
gctccaaagatgtgacacctatcttgttcctcagctcctaaaacttgtcattcttcacaaactttgttggaacgtctgctt |
43566147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 29457432 - 29457356
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtct |
169 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
29457432 |
gctccaaagatgtgacacctatcttgttcctcagctcctaaaacttgtcattcttcacaaactttgttggaacgtct |
29457356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 442
Target Start/End: Complemental strand, 42744175 - 42744137
Alignment:
| Q |
404 |
atttatttaagggttaataggtctttaccccatgtaatt |
442 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
42744175 |
atttttttaagggttaatacgtctttaccccatgtaatt |
42744137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 16577414 - 16577377
Alignment:
| Q |
404 |
atttatttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
16577414 |
atttattttagggttaataggtctttaccccctgtaat |
16577377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 93 - 434
Target Start/End: Complemental strand, 13788475 - 13788134
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13788475 |
gctccaaagatgcgacactcatcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgcttcatatatagcagtaggaca |
13788376 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
13788375 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaag |
13788276 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
13788275 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
13788176 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttacccc |
434 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
13788175 |
aaaaaataataatttatttaagacctaataggtctttacccc |
13788134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 93 - 434
Target Start/End: Original strand, 25805667 - 25806008
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25805667 |
gctccaaagatgcgacactcatcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgcttcatatatagcagtaggaca |
25805766 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
25805767 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaag |
25805866 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
25805867 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
25805966 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttacccc |
434 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
25805967 |
aaaaaataataatttatttaagacctaataggtctttacccc |
25806008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 93 - 413
Target Start/End: Original strand, 22910689 - 22911018
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
22910689 |
gctccaaagatgcggcactcatcttgttcctcaactcctcaaacttgtcatgcttcacaaattttgttggaacgtctgcttcatatatagcagtaggata |
22910788 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagata |
285 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||||| |||| ||||| |||||||||||| ||||||||||||||||||| | ||| |
|
|
| T |
22910789 |
atgtagcggtttcagtctccctttatttacttgatctctaatacagtgactccttatctcaatgtgtttacggtaaaatgtcacaatatttttttaaata |
22910888 |
T |
|
| Q |
286 |
ggtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataa-nnnnnnncttgatttacattgtatttcaaatt |
384 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
22910889 |
ggtaaaatttcatagtgtttaattttagtttaacaattagattggagaaaaatatgacaacttataattttttttcttaatttacattgtattttaaatg |
22910988 |
T |
|
| Q |
385 |
gttcaagtaaaa-aatactaatttatttaa |
413 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |
|
|
| T |
22910989 |
gttcaagtaaaataataataatttatttaa |
22911018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 93 - 397
Target Start/End: Complemental strand, 39625579 - 39625267
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
39625579 |
gctccaaagatgtgacacccatcttgtttctcaactcctcaaacttgtcatgcttcacaatttttgtaggaacgtctgcttcgtatatagcaataggaca |
39625480 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcg-------tgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagata |
285 |
Q |
| |
|
||||| ||||| || | || ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
39625479 |
atgtagcggttccagccaccctttctttacttgatctctaatacattgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatg |
39625380 |
T |
|
| Q |
286 |
ggtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataa-nnnnnnncttgatttacattgtatttcaaatt |
384 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39625379 |
ggtaaagtttcatagtgtataatttaagtttaacaattagattggagaaaaatatgacaacttataattttttttcttgatttacattgtatttcaaata |
39625280 |
T |
|
| Q |
385 |
gttcaagtaaaaa |
397 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39625279 |
attcaagtaaaaa |
39625267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 23725524 - 23725617
Alignment:
| Q |
137 |
ttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggacaatgtaacggttgtagtctccttttatttacttgatctc |
230 |
Q |
| |
|
||||||||||||| || ||||| | |||||||| |||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||||| |
|
|
| T |
23725524 |
ttgtcatgcttcataatttttggtagaacgtctcattcatatatagcagtaggacaatgtaacggttctagccttcttttgtttacttgatctc |
23725617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 441
Target Start/End: Complemental strand, 26097090 - 26097057
Alignment:
| Q |
408 |
atttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
26097090 |
atttaagggttaataggtctttaccccctgtaat |
26097057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 4646745 - 4646777
Alignment:
| Q |
402 |
taatttatttaagggttaataggtctttacccc |
434 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
4646745 |
taatttttttaagggttaataggtctttacccc |
4646777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 8928806 - 8928842
Alignment:
| Q |
405 |
tttatttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
8928806 |
tttattttagggttaataggtctttaccccctgtaat |
8928842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 441
Target Start/End: Complemental strand, 18458864 - 18458832
Alignment:
| Q |
409 |
tttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
18458864 |
tttaagggttaataggtctttaccccctgtaat |
18458832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 93 - 434
Target Start/End: Complemental strand, 28845168 - 28844827
Alignment:
| Q |
93 |
gctccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggaca |
192 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28845168 |
gctccaaagatgcgacactcatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtatgaca |
28845069 |
T |
|
| Q |
193 |
atgtaacggttgtagtctccttttatttacttgatctcgtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaag |
292 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| | |||||| |
|
|
| T |
28845068 |
atgtaacggttgcagtctccttttatttacttgatctcgtgattcattgtctcaatgtgtttacggtaaaatgtcacaatatttttttagacatgtaaag |
28844969 |
T |
|
| Q |
293 |
tttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagt |
392 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
28844968 |
tttcatattgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagt |
28844869 |
T |
|
| Q |
393 |
aaaaaatactaatttatttaagggttaataggtctttacccc |
434 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
28844868 |
aaaaaataataatttatttaagacctaataggtctttacccc |
28844827 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 96 - 413
Target Start/End: Complemental strand, 10188471 - 10188145
Alignment:
| Q |
96 |
ccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgctt-catatatagcagtaggacaat |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
10188471 |
ccaaagatgcgacacccatcttgttcctcagctcctcaaacttgtcatgcttcacaaattttgttggaaagtccgcttccatatatagcagtaggacaat |
10188372 |
T |
|
| Q |
195 |
gtaacggttgtagtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagatagg |
287 |
Q |
| |
|
||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
10188371 |
gtagcggtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtctacgctaaaatgtcacaatatttttttagatagt |
10188272 |
T |
|
| Q |
288 |
taaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataa-nnnnnnncttgatttacattgtatttcaaattgt |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |
|
|
| T |
10188271 |
taaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataattttttttcttgatttaaattgtatttcaaataat |
10188172 |
T |
|
| Q |
387 |
tcaagtaaaaaatactaatttatttaa |
413 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
10188171 |
tcaagtaaaaaataataatttatttaa |
10188145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 96 - 413
Target Start/End: Complemental strand, 4140385 - 4140060
Alignment:
| Q |
96 |
ccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgctt-catatatagcagtaggacaat |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
4140385 |
ccaaagatgcgacacccatcttgttcctcagctcctcaaacttgtcatgcttcacaaattatgttggaaagtctgcttccatatatagcagtaggacaat |
4140286 |
T |
|
| Q |
195 |
gtaacggttgtagtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagatagg |
287 |
Q |
| |
|
||| ||||| ||||||| ||||||||||||||||| ||||||| ||||||| |||||| ||| ||||||||||||||| |||||| |
|
|
| T |
4140285 |
gtagcggtttcagtctccctttatttacttgatctctaatacagtgattcattgtctcgatgtgtctacgctaaaatgtcacaatatttttttagatagt |
4140186 |
T |
|
| Q |
288 |
taaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgtt |
387 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| || |
|
|
| T |
4140185 |
taaagtttcatagtatttaatttaagtttaacaattagattgaagaaaaatatgacaacttataatttttttcttgatttaaattgtatttcaaataatt |
4140086 |
T |
|
| Q |
388 |
caagtaaaaaatactaatttatttaa |
413 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
4140085 |
caagtaaaaaataataatttatttaa |
4140060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 199 - 398
Target Start/End: Original strand, 917103 - 917310
Alignment:
| Q |
199 |
cggttgtagtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaa |
291 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||||||| |||||||||||| || | ||||||||||||||||| |||||||||| |
|
|
| T |
917103 |
cggttttagtctccctttatttacttgatctctaatatagtgattctttgtctcaatgtatttatggtaaaatgtcacaatatttttttcgataggtaaa |
917202 |
T |
|
| Q |
292 |
gtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataa-nnnnnnncttgatttacattgtatttcaaattgttcaa |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| ||| |||||||||||||||||||||||| ||| || |
|
|
| T |
917203 |
atttcatagtgtttaatttaagtttaacaattagatcgaagaaaaatatgtcaacttgtaattttttttcttgatttacattgtatttcaaatggttgaa |
917302 |
T |
|
| Q |
391 |
gtaaaaaa |
398 |
Q |
| |
|
|||||||| |
|
|
| T |
917303 |
gtaaaaaa |
917310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 231 - 399
Target Start/End: Complemental strand, 5369126 - 5368959
Alignment:
| Q |
231 |
gtgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnnagataggtaaagtttcatagtgtttaatttaagtttaacaattagattgg |
330 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5369126 |
gtgattccttgtcttaatgtgtttacggtaaaatttcacaaattttttttttataggtaaagtttcatagtgtttaatttacgtttaacaattagattgg |
5369027 |
T |
|
| Q |
331 |
agaaaaatatgacaacttataannnnnnncttgatttacattgtatttcaaattgttcaagtaaaaaat |
399 |
Q |
| |
|
||||||| |||| || |||||| ||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
5369026 |
agaaaaaaatgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaat |
5368959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 917028 - 917100
Alignment:
| Q |
100 |
agatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgctt |
173 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||| |
|
|
| T |
917028 |
agatgcgacacccatcctgttcctcagctcctaaaacttgtcatgcttcacaaactttgttgg-acgtctgctt |
917100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 29309555 - 29309592
Alignment:
| Q |
404 |
atttatttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29309555 |
atttatttaagggttaataggtctttaccccctgtaat |
29309592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 25602006 - 25601977
Alignment:
| Q |
412 |
aagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
25602006 |
aagggttaataggtctttaccccatgtaat |
25601977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 441
Target Start/End: Original strand, 43400665 - 43400698
Alignment:
| Q |
408 |
atttaagggttaataggtctttaccccatgtaat |
441 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
43400665 |
atttaagggttaataggtctttaccccctgtaat |
43400698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 95 - 352
Target Start/End: Complemental strand, 13697 - 13433
Alignment:
| Q |
95 |
tccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggacaat |
194 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| || ||||| | |||||| || ||||||||||||||||||||||| |
|
|
| T |
13697 |
tccaaagatgtgacacccatcttgttcctcacctcctcaaacttgtcatgcttcataatttttggtagaacgtttgattcatatatagcagtaggacaat |
13598 |
T |
|
| Q |
195 |
gtaacggttgtagtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgttcacggtaaaatgtcacaata-nnnnnnnagatag |
286 |
Q |
| |
|
||| ||||| ||| || | ||| |||||||||| || |||||||||||||||||||||| | ||||||| |||||||| |||||| |
|
|
| T |
13597 |
gtagcggttctagccttcctttgtttacttgatatctaatacaatgattccttgtctcaatgtgtttatagtaaaat-tcacaatattttttttagatag |
13499 |
T |
|
| Q |
287 |
gtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataa |
352 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13498 |
gtaaagtttcaaagtgtttaatttaagtttaacaattagattgaagaaaaatatgacaacttataa |
13433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0516 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0516
Description:
Target: scaffold0516; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 95 - 352
Target Start/End: Complemental strand, 4465 - 4201
Alignment:
| Q |
95 |
tccaaagatgcgacacccatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgcttcatatatagcagtaggacaat |
194 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||| | ||||| | ||||||||| |||| |||||| ||||||||||| |
|
|
| T |
4465 |
tccaaagatgtgacacccatcttgtttctcacctcctcaaacttgtcatgcttcatagtttttgttagaacgtctgattca-atatagtagtaggacaat |
4367 |
T |
|
| Q |
195 |
gtaacggttgtagtctccttttatttacttgatctcg-------tgattccttgtctcaatgtgttcacggtaaaatgtcacaatannnnnnn-agatag |
286 |
Q |
| |
|
||| || || ||| || | ||| |||||||||| || |||||||||||||||||||||| || ||||||| |||||||| |||||| |
|
|
| T |
4366 |
gtagcgattctagccttcctttgtttacttgatatctaatacaatgattccttgtctcaatgtgtttacagtaaaatttcacaatattttttttagatag |
4267 |
T |
|
| Q |
287 |
gtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataa |
352 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4266 |
gtaaagtttcaaagtgtttaatttaagtttaacaattagattggagaaaaaaatgacaacttataa |
4201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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