View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15040_low_18 (Length: 346)

Name: NF15040_low_18
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15040_low_18
NF15040_low_18
[»] chr6 (24 HSPs)
chr6 (17-228)||(30954636-30954847)
chr6 (22-228)||(30985707-30985910)
chr6 (22-228)||(30991871-30992074)
chr6 (23-228)||(31223892-31224097)
chr6 (32-228)||(30944391-30944587)
chr6 (227-330)||(30954905-30955008)
chr6 (14-228)||(30960376-30960592)
chr6 (227-330)||(30985968-30986071)
chr6 (227-330)||(30992132-30992235)
chr6 (227-330)||(30944645-30944748)
chr6 (227-330)||(30960650-30960753)
chr6 (227-330)||(31224155-31224258)
chr6 (151-228)||(31145994-31146071)
chr6 (151-225)||(31190055-31190129)
chr6 (151-228)||(31172307-31172384)
chr6 (279-330)||(31201698-31201749)
chr6 (169-228)||(31201859-31201918)
chr6 (166-218)||(31131754-31131806)
chr6 (279-330)||(31145833-31145884)
chr6 (279-330)||(31172146-31172197)
chr6 (279-330)||(31189891-31189942)
chr6 (226-321)||(31213885-31213980)
chr6 (226-329)||(31229435-31229538)
chr6 (293-330)||(31131619-31131656)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 30954636 - 30954847
Alignment:
Q  17 cacagaataagataattcttattataacaacaggtgttggaattgcagcaatggtagcattgctgatgtgcatcataatttgttggtataaaggcgagtc 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30954636 cacaaaataagataattcttattataacaacaggtgttggaattgcagcaatggtagcattgctgatgtgcatcataatttgttggtataaaggcgagtc 30954735  T
Q  117 attgatactacaagtgaagtttctgtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30954736 attgatactacaagtgaagtttctgtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaa 30954835  T
Q  217 ttttcagaaata 228  Q
    ||||||||||||    
T  30954836 ttttcagaaata 30954847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 30985707 - 30985910
Alignment:
Q  22 aataagataattcttattataacaacaggtgttggaattgcagcaatggtagcattgctgatgtgcatcataatttgttggtataaaggcgagtcattga 121  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||| ||    
T  30985707 aataagataattcttattctaacagcaggtgttggaagtgcagcaatggtagcattgctgatgtgcatcataatctgttgttatagaggcaagtcatcga 30985806  T
Q  122 tactacaagtgaagtttctgtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaattttc 221  Q
    |||||   || || |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  30985807 tacta---gtaaaattttggtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagttctattgcaaaaaagatataagttttc 30985903  T
Q  222 agaaata 228  Q
    |||||||    
T  30985904 agaaata 30985910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 30991871 - 30992074
Alignment:
Q  22 aataagataattcttattataacaacaggtgttggaattgcagcaatggtagcattgctgatgtgcatcataatttgttggtataaaggcgagtcattga 121  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||| ||    
T  30991871 aataagataattcttattctaacagcaggtgttggaagtgcagcaatggtagcattgctgatgtgcatcataatctgttgttatagaggcaagtcatcga 30991970  T
Q  122 tactacaagtgaagtttctgtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaattttc 221  Q
    |||||   || || |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  30991971 tacta---gtaaaattttggtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagttctattgcaaaaaagatataagttttc 30992067  T
Q  222 agaaata 228  Q
    |||||||    
T  30992068 agaaata 30992074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 31223892 - 31224097
Alignment:
Q  23 ataagataattcttattataacaacaggtgttggaattgcagcaatggtagcattgctgatgtgcatcataatttgttggtataaaggcgagtcattgat 122  Q
    |||||||||||||  || |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||  | || |||| ||||||| ||    
T  31223892 ataagataattctacttctaacaacaggtgttggaagtgcagcaatggtagcattgctgatgtgcatcacaatttgttattttagaggcaagtcattaat 31223991  T
Q  123 actacaagtgaagtttctgtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaattttca 222  Q
    || |||||| |  | |  ||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| ||||    
T  31223992 acaacaagtaacatcttggtttaggacaaagaatgataaaaacattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattca 31224091  T
Q  223 gaaata 228  Q
    ||||||    
T  31224092 gaaata 31224097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 30944391 - 30944587
Alignment:
Q  32 ttcttattataacaacaggtgttggaattgcagcaatggtagcattgctgatgtgcatcataatttgttggtataaaggcgagtcattgatactacaagt 131  Q
    |||| ||||||| |||||||||||||| || |||||| || ||||||||||||||||||||||| ||||| |||| |||| |||||| ||||||||| ||    
T  30944391 ttctcattataaaaacaggtgttggaagtgtagcaatagttgcattgctgatgtgcatcataatctgttgttatagaggcaagtcatcgatactacatgt 30944490  T
Q  132 gaagtttctgtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaattttcagaaata 228  Q
     || |||  |||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||| | |||||||||||||||||||||||||||    
T  30944491 aaaattttggtttaagacaaagaatgatataaacattgaagaatttttaaaagatcatagagcactattacaaaaaagatataaattttcagaaata 30944587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 30954905 - 30955008
Alignment:
Q  227 tacaaaggaaagctagtgaatggttcccttgtggcagtgaagatgctaaatgcatcaaaaggaaatggtgaagaatttattaatgaggttactagtatta 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30954905 tacaaaggaaagctagtgaatggttcccttgtggcagtgaagatgctaaatgcatcaaaaggaaatggtgaagaatttattaatgaggttactagtatta 30955004  T
Q  327 ctag 330  Q
    ||||    
T  30955005 ctag 30955008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 30960376 - 30960592
Alignment:
Q  14 caacacagaataagataattct--tattataacaacaggtgttggaattgcagcaatggtagcattgctgatgtgcatcataatttgttggtataaaggc 111  Q
    ||||||| || |||||||||||  |||| |||||||||||||||||| ||||||||||| | |  |||| ||| |||||||||||| ||| | || ||||    
T  30960376 caacacataacaagataattctcttattctaacaacaggtgttggaagtgcagcaatggcaaccctgctaatgggcatcataatttattgttttagaggc 30960475  T
Q  112 gagtcattgatactacaagtgaagtttctgtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagat 211  Q
     || |||  || |||||||| || ||||  | ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||    
T  30960476 aagccatctatgctacaagtaaaatttccatctaagacaaataatgatataaacattgaagcatttctaaaagatcatggagctctactgcaaaaaagat 30960575  T
Q  212 ataaattttcagaaata 228  Q
    |||||||||||||||||    
T  30960576 ataaattttcagaaata 30960592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 30985968 - 30986071
Alignment:
Q  227 tacaaaggaaagctagtgaatggttcccttgtggcagtgaagatgctaaatgcatcaaaaggaaatggtgaagaatttattaatgaggttactagtatta 326  Q
    |||||||||||| || | |||||||| ||||| |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  30985968 tacaaaggaaagttattcaatggttctcttgtagcagtgaagatattaaatgcatcaaaaggaaatggtgaagactttattaatgaggttgctagtatta 30986067  T
Q  327 ctag 330  Q
    ||||    
T  30986068 ctag 30986071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 30992132 - 30992235
Alignment:
Q  227 tacaaaggaaagctagtgaatggttcccttgtggcagtgaagatgctaaatgcatcaaaaggaaatggtgaagaatttattaatgaggttactagtatta 326  Q
    |||||||||||| || | |||||||| ||||| |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  30992132 tacaaaggaaagttattcaatggttctcttgtagcagtgaagatattaaatgcatcaaaaggaaatggtgaagactttattaatgaggttgctagtatta 30992231  T
Q  327 ctag 330  Q
    ||||    
T  30992232 ctag 30992235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 30944645 - 30944748
Alignment:
Q  227 tacaaaggaaagctagtgaatggttcccttgtggcagtgaagatgctaaatgcatcaaaaggaaatggtgaagaatttattaatgaggttactagtatta 326  Q
    |||||||||||| || | |||||||| ||||| |||||||||||  | |||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  30944645 tacaaaggaaagttattcaatggttctcttgtagcagtgaagattttgaatgcatcgaaaggaattggtgaagactttattaatgaggttactagtatta 30944744  T
Q  327 ctag 330  Q
    ||||    
T  30944745 ctag 30944748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 30960650 - 30960753
Alignment:
Q  227 tacaaaggaaagctagtgaatggttcccttgtggcagtgaagatgctaaatgcatcaaaaggaaatggtgaagaatttattaatgaggttactagtatta 326  Q
    |||||||||||| || |||||||||  | |||||||||||||||  | ||||||||||||||||| ||||||||||||||||| |||||| |||||||||    
T  30960650 tacaaaggaaagttattgaatggttgtcatgtggcagtgaagattttgaatgcatcaaaaggaaacggtgaagaatttattaacgaggttgctagtatta 30960749  T
Q  327 ctag 330  Q
    ||||    
T  30960750 ctag 30960753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 31224155 - 31224258
Alignment:
Q  227 tacaaaggaaagctagtgaatggttcccttgtggcagtgaagatgctaaatgcatcaaaaggaaatggtgaagaatttattaatgaggttactagtatta 326  Q
    |||||||||||| || | |||||||  |||||||||||||||||  | |||| |||||||||||||||||| |||||||||||||||||| ||||||||     
T  31224155 tacaaaggaaagttatttaatggttgtcttgtggcagtgaagatattgaatgtatcaaaaggaaatggtgaggaatttattaatgaggttgctagtattt 31224254  T
Q  327 ctag 330  Q
    ||||    
T  31224255 ctag 31224258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 31146071 - 31145994
Alignment:
Q  151 aagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaattttcagaaata 228  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||||    
T  31146071 aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaaata 31145994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 31190129 - 31190055
Alignment:
Q  151 aagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaattttcagaa 225  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||| |||||||    
T  31190129 aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaa 31190055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 31172384 - 31172307
Alignment:
Q  151 aagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaattttcagaaata 228  Q
    ||||||||||  || |||||||||||||||||||||||||||||| || |||| ||||||||||||||||| ||||||    
T  31172384 aagaatgataacaatattgaagcatttttaaaagaccatggagctttattgcagaaaagatataaattttctgaaata 31172307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 31201749 - 31201698
Alignment:
Q  279 catcaaaaggaaatggtgaagaatttattaatgaggttactagtattactag 330  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  31201749 catccaaaggaaatggtgaagaatttattaatgaggttgctagtattactag 31201698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 31201918 - 31201859
Alignment:
Q  169 gaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaattttcagaaata 228  Q
    ||||||||||||||||| |||||||||||  |||| ||||||||||||| ||||||||||    
T  31201918 gaagcatttttaaaagatcatggagctctgttgcagaaaagatataaatattcagaaata 31201859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 31131806 - 31131754
Alignment:
Q  166 attgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaatt 218  Q
    |||||||||||||||||||| ||| |||||||| |||| ||||||||||||||    
T  31131806 attgaagcatttttaaaagatcatagagctctattgcagaaaagatataaatt 31131754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 31145884 - 31145833
Alignment:
Q  279 catcaaaaggaaatggtgaagaatttattaatgaggttactagtattactag 330  Q
    |||| |||||||| |||||||||||||||||||||||| | |||||||||||    
T  31145884 catccaaaggaaacggtgaagaatttattaatgaggtttccagtattactag 31145833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 31172197 - 31172146
Alignment:
Q  279 catcaaaaggaaatggtgaagaatttattaatgaggttactagtattactag 330  Q
    |||| |||||||| |||||||||||||||||||||||| |||||||| ||||    
T  31172197 catccaaaggaaacggtgaagaatttattaatgaggtttctagtatttctag 31172146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 31189942 - 31189891
Alignment:
Q  279 catcaaaaggaaatggtgaagaatttattaatgaggttactagtattactag 330  Q
    |||| |||||||| |||||||||||||||||||| ||| |||||||||||||    
T  31189942 catccaaaggaaacggtgaagaatttattaatgaagtttctagtattactag 31189891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 321
Target Start/End: Original strand, 31213885 - 31213980
Alignment:
Q  226 atacaaaggaaagctagtgaatggttcccttgtggcagtgaagatgctaaatgcatcaaaaggaaatggtgaagaatttattaatgaggttactag 321  Q
    |||||||||||||||| | ||||    ||||||||| ||||||||  |||| ||||| |||||||| |||||||||||||| || |||||| ||||    
T  31213885 atacaaaggaaagctactcaatgaccgccttgtggccgtgaagatattaaacgcatccaaaggaaaaggtgaagaatttatgaacgaggtttctag 31213980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 31229435 - 31229538
Alignment:
Q  226 atacaaaggaaagctagtgaatggttcccttgtggcagtgaagatgctaaatgcatcaaaaggaaatggtgaagaatttattaatgaggttactagtatt 325  Q
    |||| ||||||||||||| |||| || || |||||| || ||||| || ||    || |||||||||||||| |||||||| ||||||||| |||| |||    
T  31229435 atacgaaggaaagctagtcaatgattgccctgtggccgtaaagatactgaaaaagtctaaaggaaatggtgatgaatttatgaatgaggtttctagcatt 31229534  T
Q  326 acta 329  Q
    ||||    
T  31229535 acta 31229538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 31131656 - 31131619
Alignment:
Q  293 ggtgaagaatttattaatgaggttactagtattactag 330  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  31131656 ggtgaagaatttattaatgaggttgctagtatttctag 31131619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University