View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15040_low_20 (Length: 316)
Name: NF15040_low_20
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 1209325 - 1209562
Alignment:
| Q |
1 |
tggtttttcattctttttagctaaatgggtcattagatcaatnnnnnnnntt-gaattttgattttgggttattgcttttggccaatccaattcataaaa |
99 |
Q |
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| T |
1209325 |
tggtttttcattctttttagctaaatgggtcattggatcaataacaaaaatttgaattttgattttgggttattgtttttggccaatccaattcataaaa |
1209424 |
T |
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| Q |
100 |
gaggaaaattttgatttgaagggatcattttgttatgattagatgttattgaaattttgaattggaatgaatgtgtaggtagcaaggcatttgatcgatg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1209425 |
gaggaaaattttgatttgaagggatcattttgttatgattagatgttattgaaattttgaattggaatgaatgtgtaggtggcaaggcatttgatcgatg |
1209524 |
T |
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| Q |
200 |
caggacatgatgtgcatttggtaactggtgctcctgat |
237 |
Q |
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| T |
1209525 |
caggacatgatgtgcatttggtaactggtgctcctgat |
1209562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 23219992 - 23219903
Alignment:
| Q |
148 |
ttgaaattttgaattggaatgaatgtgtaggtagcaaggcatttgatcgatgcaggacatgatgtgcatttggtaactggtgctcctgat |
237 |
Q |
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||||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23219992 |
ttgaatttttgaattggaatgaatgcgtagttggcaaggcatttgatcgatgcaggacatgatgtgcatttggtaactggtgctcctgat |
23219903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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