View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15040_low_21 (Length: 306)
Name: NF15040_low_21
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 5834878 - 5835154
Alignment:
| Q |
10 |
agaagaaaaactaacaaattaatattgtgttttatacgataaatttatggtggtggaatatgatacctcaaattgatgttgtatttttaccactatacca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5834878 |
agaagaaaaactaacaaattaatattgtgttttatacgataaatttatggtggtggaatatgatacctcaatttgatgttgtatttttaccactatacca |
5834977 |
T |
|
| Q |
110 |
aacttctgtacttatatatcctctctttttacnnnnnnnnnnntatataccaattaaatgtatgttgcaaaaaagatttagtatttgtttggaaccacaa |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5834978 |
aacttttgtacttatatatcctctctttttac----aaaaaaatatataccaattaaatgtatgtaacaaaaaagatttagtatttgtttggaaccacaa |
5835073 |
T |
|
| Q |
210 |
ttgattccgttcaaacacacactagaatgttgggtgtttggaattgaaacaaagaaatatttattaagagaatagtttaat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
5835074 |
ttgattccgttcaaacacacactagaatgttgggtgtttggaattgaaacaatgaaatatttattcagagaatagtttaat |
5835154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University