View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15040_low_24 (Length: 275)
Name: NF15040_low_24
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_low_24 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 120 - 275
Target Start/End: Complemental strand, 23796884 - 23796732
Alignment:
| Q |
120 |
gattaatgttacatgaacatctaaaaattaacatcttttcaacacttataaaaatacataacttataattaacttgaagagagacaaaataattaaaaaa |
219 |
Q |
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| T |
23796884 |
gattaatgttacatgaacatctaaaaattaacatcttttca-cacttataaaaatacataacttataactaacttgaagagagacaaaataattaaaaaa |
23796786 |
T |
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| Q |
220 |
tcaaatggnnnnnnnnnnnnagataaaatgtttgtattgataagcatgattcgatc |
275 |
Q |
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| T |
23796785 |
tcaaatgg--tatatatataagataaaatgtttgtattgataagcatgattcgatc |
23796732 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23797004 - 23796933
Alignment:
| Q |
1 |
aatagcaacacctacctatgattttaaggatagctccttaacgttggcacctggatggacatacatcatacc |
72 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23797004 |
aatagtaacacctacctatgattttaaggatagctccttaacgttggcacctggatggacatacatcatacc |
23796933 |
T |
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