View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15040_low_27 (Length: 266)
Name: NF15040_low_27
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_low_27 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 125 - 266
Target Start/End: Original strand, 54495622 - 54495743
Alignment:
| Q |
125 |
gagttttccacaagtcataaaaaatgaatgataatttggaaacttcatgtatttgtaggagtaggagtacaaaatggaggggtaggaggtaaattgcttc |
224 |
Q |
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| T |
54495622 |
gagttttccacaagtcataaaaaatgaatgataatttggaaacttcatgtatttgtaggggtaggag--------------------ggtaaattgcttc |
54495701 |
T |
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| Q |
225 |
aaatttaaaatccacaaaatttgggatttaaaccggtgaatt |
266 |
Q |
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| T |
54495702 |
aaatttaaaatccacaaaatttgggatttaaaccggtgaatt |
54495743 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 54495487 - 54495522
Alignment:
| Q |
44 |
ccttacacttccatcgtaacagaattgttgagagaa |
79 |
Q |
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| T |
54495487 |
ccttacacttccatcgtaacagaattgttgagagaa |
54495522 |
T |
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