View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15040_low_3 (Length: 687)
Name: NF15040_low_3
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 85 - 671
Target Start/End: Original strand, 20768311 - 20768892
Alignment:
| Q |
85 |
gtatttattaaatcaacattagtaattattttacaattatatttgatgagatttgaaatctagccttttgaaattacaatgttaaacttttaatactcaa |
184 |
Q |
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| T |
20768311 |
gtatttattaaatcaacattagtaattattttacaattatatttcatgagatttgaaatctagccttttgaaattacaatgttaaacttttaatactcaa |
20768410 |
T |
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| Q |
185 |
ctctcaccacttattcctaaaaaataaaactgtcaccacttataacaataaacttaaaacacacctaatttgtattgtatttctctcattttaataaagt |
284 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20768411 |
ctctcaccacttattcctaaaaaataaaactctcaccacttataacaataaacttaaaacacacctaatttgtattgtatttctctcattttaataaagt |
20768510 |
T |
|
| Q |
285 |
cctaaagaaagttaccttcatagtttatggtagtaagtctttctcttaattgttaacatagcccttgtaataatgttaagagtcctaccataacttcctc |
384 |
Q |
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| T |
20768511 |
cctaaagaaagttaccttcatagtttatggtagtaagtctttctcttaattgttaacatagcccttgtaataatgttaagagtcctaccataacttcctc |
20768610 |
T |
|
| Q |
385 |
tcaaaaaagctacattcatagttatcgaatatattgtttttagcttattttaatgaattttcctctatgtagcttatggaaacaacttaaattagagctt |
484 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20768611 |
tcaaaaaagctacattcatggttatcgaatatattgtttttagcttattttaatgaattttcctctatgtagcttatggacacaacttaaattagagctt |
20768710 |
T |
|
| Q |
485 |
accaatgctttctcttcaattattttgctcctattttcatagattccctcgtctataagtaaagtctatttcagttgtgtcgaacaacaactgtgacaac |
584 |
Q |
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| T |
20768711 |
accaatgctttctcttcaattattttgctcctattttcatagattccctcgtctataagtaaagtctatttcagttgtgtcgaacaacaaccgtgactac |
20768810 |
T |
|
| Q |
585 |
ctctcaatgggatttatatcnnnnnnnnnnnnnnnnnnagaaactaaactaaccccttcaatgggtatatatcttgtttgttagatc |
671 |
Q |
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| T |
20768811 |
ctctcaatgggatttatat-----atattttttttttaagaaactaaactaactccttcaatgggtatatatcttgtttgttagatc |
20768892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 20761511 - 20761565
Alignment:
| Q |
8 |
gataatactcgtaaaatttagatacactttaaaaaattgaggaagataattatta |
62 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20761511 |
gataacactcgtaaaatttagatacactttaaaaaattgaggaagataattatta |
20761565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 20767902 - 20767956
Alignment:
| Q |
8 |
gataatactcgtaaaatttagatacactttaaaaaattgaggaagataattatta |
62 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20767902 |
gataacactcgtaaaatttagatacactttaaaaaattgaggaagataattatta |
20767956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 20768252 - 20768290
Alignment:
| Q |
61 |
tatttaataaataaagggacactagtatttattaaatca |
99 |
Q |
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| T |
20768252 |
tatttaataaataaagggacactagtatttattaaatca |
20768290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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