View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15040_low_31 (Length: 246)
Name: NF15040_low_31
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 17976196 - 17976244
Alignment:
| Q |
37 |
gacatgtttgatcaaacttcatgttaactgttaaaatgaacattattta |
85 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
17976196 |
gacatgtttgatcaaactccatgttaactgttaaaatgaactttattta |
17976244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 17983900 - 17983938
Alignment:
| Q |
164 |
aaaagagtttatgacatttcttgtaagcttttttcgggc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17983900 |
aaaagagtttatgacatttcttgtaagcttttttcgggc |
17983938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 17987251 - 17987287
Alignment:
| Q |
93 |
ctggtgaataactctctcatgcttgggaaacttatct |
129 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17987251 |
ctggtgaaaaactctctcatgcttgggaaacttatct |
17987287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 17987213 - 17987247
Alignment:
| Q |
37 |
gacatgtttgatcaaacttcatgttaactgttaaa |
71 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
17987213 |
gacatgtttgataaaacttcatgttaactgttaaa |
17987247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University