View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15040_low_33 (Length: 213)
Name: NF15040_low_33
Description: NF15040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15040_low_33 |
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| [»] scaffold0029 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 25658899 - 25659078
Alignment:
| Q |
19 |
aagtggaccataccatgttaatcttgaaatattttgtggaacgggtagctcaacagtttgccccgacccttcaaaatatataaattgggatggctcgcac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25658899 |
aagtggaccataccatgttaatcttgaaatattttgtggaacgggtagctcaacagtttgccccgacccttcaaaatatataaattgggatggctcacac |
25658998 |
T |
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| Q |
119 |
ttaactgaagcatcttataagttaatagcgaagggactagttgaaggcccttttgcaaatccttcccttaaaactcctct |
198 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25658999 |
ttaactgaagcatcatataagttaatagcaaagggactagttgaaggcccttttgcaaatccttcccttaaaactcctct |
25659078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 25665304 - 25665483
Alignment:
| Q |
19 |
aagtggaccataccatgttaatcttgaaatattttgtggaacgggtagctcaacagtttgccccgacccttcaaaatatataaattgggatggctcgcac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25665304 |
aagtggaccataccatgttaatcttgaaatattttgtggaacgggtagctcaacagtttgccccgacccttcaaaatatataaattgggatggctcacac |
25665403 |
T |
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| Q |
119 |
ttaactgaagcatcttataagttaatagcgaagggactagttgaaggcccttttgcaaatccttcccttaaaactcctct |
198 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25665404 |
ttaactgaagcatcatataagttaatagcaaagggactagttgaaggcccttttgcaaatccttcccttaaaactcctct |
25665483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 25671709 - 25671888
Alignment:
| Q |
19 |
aagtggaccataccatgttaatcttgaaatattttgtggaacgggtagctcaacagtttgccccgacccttcaaaatatataaattgggatggctcgcac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25671709 |
aagtggaccataccatgttaatcttgaaatattttgtggaacgggtagctcaacagtttgccccgacccttcaaaatatataaattgggatggctcacac |
25671808 |
T |
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| Q |
119 |
ttaactgaagcatcttataagttaatagcgaagggactagttgaaggcccttttgcaaatccttcccttaaaactcctct |
198 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25671809 |
ttaactgaagcatcatataagttaatagcaaagggactagttgaaggcccttttgcaaatccttcccttaaaactcctct |
25671888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 25678114 - 25678293
Alignment:
| Q |
19 |
aagtggaccataccatgttaatcttgaaatattttgtggaacgggtagctcaacagtttgccccgacccttcaaaatatataaattgggatggctcgcac |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25678114 |
aagtggaccataccatgttaatcttgaaatattttgtggaacgggtagctcaacagtttgccccgacccttcaaaatatataaattgggatggctcacac |
25678213 |
T |
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| Q |
119 |
ttaactgaagcatcttataagttaatagcgaagggactagttgaaggcccttttgcaaatccttcccttaaaactcctct |
198 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25678214 |
ttaactgaagcatcatataagttaatagcaaagggactagttgaaggcccttttgcaaatccttcccttaaaactcctct |
25678293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 25684790 - 25684969
Alignment:
| Q |
19 |
aagtggaccataccatgttaatcttgaaatattttgtggaacgggtagctcaacagtttgccccgacccttcaaaatatataaattgggatggctcgcac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25684790 |
aagtggaccataccatgttaatcttgaaatattttgtggaacgggtagctcaacagtttgccccgacccttcaaaatatataaattgggatggctcacac |
25684889 |
T |
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| Q |
119 |
ttaactgaagcatcttataagttaatagcgaagggactagttgaaggcccttttgcaaatccttcccttaaaactcctct |
198 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25684890 |
ttaactgaagcatcatataagttaatagcaaagggactagttgaaggcccttttgcaaatccttcccttaaaactcctct |
25684969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 19113241 - 19113353
Alignment:
| Q |
69 |
caacagtttgccccgacccttcaaaatatataaattgggatggctcgcacttaactgaagcatcttataagttaatagcgaagggactagttgaaggccc |
168 |
Q |
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|||| |||||| |||||||||| |||||||||||||||||||| | ||| | || |||||| | |||| | |||||| || |||||||||||||| || |
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| T |
19113241 |
caactgtttgctccgacccttctaaatatataaattgggatggaccccaccttacagaagcagcatataggcaaatagcaaaaggactagttgaaggtcc |
19113340 |
T |
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| Q |
169 |
ttttgcaaatcct |
181 |
Q |
| |
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||||||||||||| |
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| T |
19113341 |
ttttgcaaatcct |
19113353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 190
Target Start/End: Complemental strand, 33130162 - 33130043
Alignment:
| Q |
71 |
acagtttgccccgacccttcaaaatatataaattgggatggctcgcacttaactgaagcatcttataagttaatagcgaagggactagttgaaggccctt |
170 |
Q |
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|
||||||||| | || ||||||||| |||||||||||| || | ||||| ||||||||| |||||||| ||||||| || || |||||||| || || | |
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| T |
33130162 |
acagtttgctctgatccttcaaaacgtataaattgggacggacctcactttactgaagcagcttataagctaatagcaaaagggctagttgagggtccat |
33130063 |
T |
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| Q |
171 |
ttgcaaatccttcccttaaa |
190 |
Q |
| |
|
|| |||||||||| |||||| |
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| T |
33130062 |
tttcaaatccttctcttaaa |
33130043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 33120393 - 33120300
Alignment:
| Q |
97 |
tataaattgggatggctcgcacttaactgaagcatcttataagttaatagcgaagggactagttgaaggcccttttgcaaatccttcccttaaa |
190 |
Q |
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|||||||||||| || | ||||| ||||||||| |||||||| ||||||| || || |||||||| || || ||| |||||||||| |||||| |
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| T |
33120393 |
tataaattgggacggacctcactttactgaagcagcttataagctaatagcaaaagggctagttgagggtccattttcaaatccttctcttaaa |
33120300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 190
Target Start/End: Complemental strand, 43186 - 43067
Alignment:
| Q |
71 |
acagtttgccccgacccttcaaaatatataaattgggatggctcgcacttaactgaagcatcttataagttaatagcgaagggactagttgaaggccctt |
170 |
Q |
| |
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||||||||| | || ||||||||| |||||||||||| || | ||||| ||||||||| |||||||| ||||||| || || |||||||| || || | |
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| T |
43186 |
acagtttgctctgatccttcaaaacgtataaattgggacggaccacactttactgaagcagcttataagctaatagcaaaagggctagttgagggtccat |
43087 |
T |
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| Q |
171 |
ttgcaaatccttcccttaaa |
190 |
Q |
| |
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|| |||||||||| |||||| |
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| T |
43086 |
tttcaaatccttctcttaaa |
43067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 18174 - 18056
Alignment:
| Q |
71 |
acagtttgccccgacccttcaaaatatataaattgggatggctcgcacttaactgaagcatcttataagttaatagcgaagggactagttgaaggccctt |
170 |
Q |
| |
|
||||||||| | || ||||||||| |||||||||||| || | ||||| ||||||||| |||||||| ||||||| || || |||||||| || || | |
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| T |
18174 |
acagtttgctctgatccttcaaaacgtataaattgggacggaccacactttactgaagcagcttataagctaatagcaaaagggctagttgagggtccat |
18075 |
T |
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| Q |
171 |
ttgcaaatccttcccttaa |
189 |
Q |
| |
|
|| |||||||||| ||||| |
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|
| T |
18074 |
tttcaaatccttctcttaa |
18056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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